Gene

ptx4

ID
ZDB-GENE-120215-70
Name
pentraxin 4, long
Symbol
ptx4 Nomenclature History
Previous Names
  • fb77c07
  • si:ch211-157c3.5
  • wu:fb77c07
Type
protein_coding_gene
Location
Chr: 3 Mapping Details/Browsers
Description
Orthologous to human PTX4 (pentraxin 4).
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
No data available
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
No data available
Wild Type Expression Summary
Phenotype
All Phenotype Data
No data available
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
Allele Type Localization Consequence Mutagen Supplier
sa13504Allele with one point mutationUnknownPremature StopENU
European Zebrafish Resource Center (EZRC) (order this)
Zebrafish International Resource Center (ZIRC) (order this)
sa17410Allele with one point mutationUnknownPremature StopENU
Zebrafish International Resource Center (ZIRC) (order this)
European Zebrafish Resource Center (EZRC) (order this)
sa33182Allele with one point mutationUnknownPremature StopENU
Zebrafish International Resource Center (ZIRC) (order this)
European Zebrafish Resource Center (EZRC) (order this)
1 - 3 of 3
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Sequence Targeting Reagents
No data available
Human Disease
Associated With ptx4 Human Ortholog
No data available
Associated With ptx4 Via Experimental Models
No data available
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
No data available
Domain Details Per Protein
Protein Additional Resources Length
UniProtKB:A0A8M9Q479 InterPro 502
UniProtKB:A0AB32TM28 InterPro 502
UniProtKB:A0AB32TP80 InterPro 531
Transcripts
Genome Browsers
Genome Build: GRCz11Chromosome: 3
Type Name Annotation Method Has Havana Data Length (nt) Analysis
mRNA ptx4-201 (1)
Ensembl
Ensembl 2,369 nt
ZFIN BLAST
ncRNA ptx4-002 (1)
Ensembl
Ensembl 452 nt
ZFIN BLAST
Interactions and Pathways
No data available
Antibodies
No data available
Plasmids
No data available
Constructs
No data available
Marker Relationships
Relationship Marker Type Marker Accession Numbers Citations
Contained inBACCH211-157C3ZFIN Curated Data
EncodesESTfb77c07
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Sequences
Type Accession # Sequence Length (nt/aa) Analysis
RNARefSeq:XM_068218996 (1)2099 nt
ZFIN BLASTNCBI BLASTEnsemblUCSC BLAT
GenomicGenBank:CR394572 (1)147156 nt
MegaBLASTEnsembl
PolypeptideUniProtKB:A0AB32TP80 (1)531 aa
ZFIN BLASTSIB BLASTEnsembl Protein Blast
Orthology
Comparative Orthology
Alliance
Gene Tree
Ensembl
Species Symbol Chromosome Accession # Evidence
HumanPTX416
Amino acid sequence comparison (1)
Conserved genome location (synteny) (1)
MousePtx417
Amino acid sequence comparison (1)
Conserved genome location (synteny) (1)
Citations
No data available
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