ZFIN is now using GRCz12tu for Genomic Data
Gene
shank2a
- ID
- ZDB-GENE-120215-55
- Name
- SH3 and multiple ankyrin repeat domains 2a
- Symbol
- shank2a Nomenclature History
- Previous Names
-
- si:ch1073-450f2.1 (1)
- Type
- protein_coding_gene
- Location
- Chr: 18 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- Is expressed in male organism.
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 2 figures from Wang et al., 2023
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Domain | IPR001478 | PDZ domain |
| Domain | IPR001660 | Sterile alpha motif domain |
| Domain | IPR041489 | PDZ domain 6 |
| Family | IPR051569 | SH3 and multiple ankyrin repeat domains protein |
| Homologous_superfamily | IPR013761 | Sterile alpha motif/pointed domain superfamily |
| Homologous_superfamily | IPR036034 | PDZ superfamily |
| Homologous_superfamily | IPR036770 | Ankyrin repeat-containing domain superfamily |
| Repeat | IPR002110 | Ankyrin repeat |
Domain Details Per Protein
| Protein | Additional Resources | Length | Ankyrin repeat | Ankyrin repeat-containing domain superfamily | PDZ domain | PDZ domain 6 | PDZ superfamily | SH3 and multiple ankyrin repeat domains protein | Sterile alpha motif domain | Sterile alpha motif/pointed domain superfamily |
|---|---|---|---|---|---|---|---|---|---|---|
| UniProtKB:A0AB32T5B1 | InterPro | 1641 | ||||||||
| UniProtKB:A0AB32T5B9 | InterPro | 1640 |
- Genome Browsers
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
shank2a-201
(1)
|
Ensembl | 2,622 nt | ||
| mRNA |
shank2a-204
(1)
|
Ensembl | 348 nt | ||
| mRNA |
si:ch1073-450f2.1-202
(1)
|
Ensembl | 1,369 nt | ||
| mRNA |
si:ch1073-450f2.1-203
(1)
|
Ensembl | 4,367 nt |
Interactions and Pathways
No data available
Plasmids
No data available
- Genome Browsers