ZFIN is now using GRCz12tu for Genomic Data
Gene
si:ch211-185a18.2
- ID
- ZDB-GENE-120119-1
- Name
- si:ch211-185a18.2
- Symbol
- si:ch211-185a18.2 Nomenclature History
- Previous Names
- Type
- protein_coding_gene
- Location
- Chr: 17 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- Predicted to be involved in smoothened signaling pathway. Predicted to be active in centriole and ciliary basal body. Is expressed in eye photoreceptor cell. Human ortholog(s) of this gene implicated in Joubert syndrome 23 and short-rib thoracic dysplasia 14 with polydactyly. Orthologous to human KIAA0586 (KIAA0586).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 2 figures from 2 publications
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
- All Phenotype Data
- 11 figures from 2 publications
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
| Disease Ontology Term | Multi-Species Data | OMIM Term | OMIM Phenotype ID |
|---|---|---|---|
| Joubert syndrome 23 | Alliance | Joubert syndrome 23 | 616490 |
| short-rib thoracic dysplasia 14 with polydactyly | Alliance | Short-rib thoracic dysplasia 14 with polydactyly | 616546 |
Domain, Family, and Site Summary
No data available
Domain Details Per Protein
No data available
- Genome Browsers
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
cu179699.1-201
(1)
|
Ensembl | 615 nt | ||
| mRNA |
si:ch211-185a18.2-202
(1)
|
Ensembl | 2,109 nt | ||
| mRNA |
si:ch211-185a18.2-203
(1)
|
Ensembl | 5,745 nt | ||
| mRNA |
si:ch211-185a18.2-204
(1)
|
Ensembl | 5,634 nt | ||
| mRNA |
si:ch211-185a18.2-205
(1)
|
Ensembl | 5,616 nt | ||
| ncRNA |
si:ch211-185a18.2-002
(1)
|
Ensembl | 288 nt |
Interactions and Pathways
No data available
| Name | Type | Antigen Genes | Isotype | Host Organism | Assay | Source | Citations |
|---|---|---|---|---|---|---|---|
| Ab1-talpid3 | polyclonal | Rabbit |
|
1 |
Plasmids
No data available
- Genome Browsers