Gene

ctnnd1

ID

ZDB-GENE-110208-9

Name

catenin (cadherin-associated protein), delta 1

Symbol

ctnnd1 Nomenclature History

Previous Names

None

Type

protein_coding_gene

Location

Chr: 1 Mapping Details/Browsers

Description

Predicted to have cadherin binding activity. Involved in cell migration involved in gastrulation; mesodermal cell migration; and posterior lateral line neuromast primordium migration. Predicted to localize to several cellular components, including adherens junction; nucleus; and plasma membrane. Human ortholog(s) of this gene implicated in blepharocheilodontic syndrome 2. Orthologous to human CTNND1 (catenin delta 1).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

2 figures from Hsu et al., 2012

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: 8 figures from 4 publications
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With ctnnd1 Human Ortholog

Disease Ontology Term	Multi-Species Data	OMIM Term	OMIM Phenotype ID
blepharocheilodontic syndrome 2	Alliance	Blepharocheilodontic syndrome 2	617681

Associated With ctnnd1 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Family	IPR028435	Plakophilin/Delta catenin
Homologous_superfamily	IPR011989	Armadillo-like helical
Homologous_superfamily	IPR016024	Armadillo-type fold
Repeat	IPR000225	Armadillo

Domain Details Per Protein

Protein	Length	Armadillo	Armadillo-like helical	Armadillo-type fold	Plakophilin/Delta catenin
UniProtKB:A0A8M9Q693 InterPro	875
UniProtKB:A0A286Y8C1 InterPro	931
UniProtKB:A0A8M3AK93 InterPro	914
UniProtKB:A0A8M9PZY3 InterPro	944
UniProtKB:F1R6C8 InterPro	908
UniProtKB:A0A8M9Q686 InterPro	950

Transcripts

Genome Browsers

NCBI

Ensembl

ZFIN

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	ctnnd1-201 (1) Ensembl	Ensembl	4,796 nt	Select Tool ZFIN BLAST
mRNA	ctnnd1-202 (1) Ensembl	Ensembl	424 nt	Select Tool ZFIN BLAST
mRNA	ctnnd1-204 (1) Ensembl	Ensembl	552 nt	Select Tool ZFIN BLAST
mRNA	ctnnd1-205 (1) Ensembl	Ensembl	4,730 nt	Select Tool ZFIN BLAST
mRNA	ctnnd1-206 (1) Ensembl	Ensembl	539 nt	Select Tool ZFIN BLAST
mRNA	ctnnd1-208 (1) Ensembl	Ensembl	2,836 nt	Select Tool ZFIN BLAST
ncRNA	ctnnd1-005 (1) Ensembl	Ensembl	634 nt	Select Tool ZFIN BLAST
ncRNA	ctnnd1-006 (1) Ensembl	Ensembl	811 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations