Gene

ctnnd1

ID

ZDB-GENE-110208-9

Name

catenin (cadherin-associated protein), delta 1

Symbol

ctnnd1 Nomenclature History

Previous Names

None

Type

protein_coding_gene

Location

Chr: 1 Mapping Details/Browsers

Description

Predicted to have cadherin binding activity. Involved in cell migration involved in gastrulation; mesodermal cell migration; and posterior lateral line neuromast primordium migration. Predicted to localize to several cellular components, including adherens junction; nucleus; and plasma membrane. Human ortholog(s) of this gene implicated in blepharocheilodontic syndrome 2. Orthologous to human CTNND1 (catenin delta 1).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

2 figures from Hsu et al., 2012

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: 8 figures from 4 publications
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With ctnnd1 Human Ortholog

Disease Ontology Term	Multi-Species Data	OMIM Term	OMIM Phenotype ID
blepharocheilodontic syndrome 2	Alliance	Blepharocheilodontic syndrome 2	617681

Associated With ctnnd1 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Family	IPR028435	Plakophilin/Delta catenin
Homologous_superfamily	IPR011989	Armadillo-like helical
Homologous_superfamily	IPR016024	Armadillo-type fold
Repeat	IPR000225	Armadillo

Domain Details Per Protein

Protein	Length	Armadillo	Armadillo-like helical	Armadillo-type fold	Plakophilin/Delta catenin
UniProtKB:A0A8M9Q693 InterPro	875
UniProtKB:A0A286Y8C1 InterPro	931
UniProtKB:A0A8M3AK93 InterPro	914
UniProtKB:A0A8M9PZY3 InterPro	944
UniProtKB:F1R6C8 InterPro	908
UniProtKB:A0A8M9Q686 InterPro	950

Transcripts

Genome Browsers

NCBI

Ensembl

ZFIN

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	ctnnd1-201 (1) Ensembl	Ensembl	4,796 nt	Select Tool
mRNA	ctnnd1-202 (1) Ensembl	Ensembl	424 nt	Select Tool
mRNA	ctnnd1-204 (1) Ensembl	Ensembl	552 nt	Select Tool
mRNA	ctnnd1-205 (1) Ensembl	Ensembl	4,730 nt	Select Tool ZFIN BLAST
mRNA	ctnnd1-206 (1) Ensembl	Ensembl	539 nt	Select Tool
mRNA	ctnnd1-208 (1) Ensembl	Ensembl	2,836 nt	Select Tool ZFIN BLAST
ncRNA	ctnnd1-005 (1) Ensembl	Ensembl	634 nt	Select Tool
ncRNA	ctnnd1-006 (1) Ensembl	Ensembl	811 nt	Select Tool

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations