Gene

rpap1

ID

ZDB-GENE-090914-1

Name

RNA polymerase II associated protein 1

Symbol

rpap1 Nomenclature History

Previous Names

None

Type

protein_coding_gene

Location

Chr: 17 Mapping Details/Browsers

Description

Predicted to be involved in transcription by RNA polymerase II. Orthologous to human RPAP1 (RNA polymerase II associated protein 1).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

No data available

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With rpap1 Human Ortholog

No data available

Associated With rpap1 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR013929	RNA polymerase II-associated protein 1, C-terminal
Domain	IPR013930	RNA polymerase II-associated protein 1, N-terminal
Family	IPR039913	RNA polymerase II-associated protein RPAP1/Rba50

Domain Details Per Protein

Protein	Length	RNA polymerase II-associated protein 1, C-terminal	RNA polymerase II-associated protein 1, N-terminal	RNA polymerase II-associated protein RPAP1/Rba50
UniProtKB:E7FGQ5 InterPro	1406

Transcripts

Genome Browsers

NCBI

Ensembl

ZFIN

Type	Name	Annotation Method	Has Havana Data	Length (nt)	Analysis
mRNA	rpap1-201 (1) Ensembl	Ensembl		4,387 nt	Select Tool ZFIN BLAST
mRNA	rpap1-202 (1) Ensembl	Ensembl		4,546 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations