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ZIRC
ZFIN ID: ZDB-GENE-090423-1
Gene Name: sperm antigen with calponin homology and coiled-coil domains 1-like b
Gene Symbol: specc1lb
Sequence Ontology ID : SO:0000704

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(Including Attributions)
Location: Chr: 21 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Involved in frontonasal suture morphogenesis. Predicted to localize to the filamentous actin and microtubule organizing center. Used to study orofacial cleft. Human ortholog(s) of this gene  ...
GENE EXPRESSION
All Expression Data: Fig. 3 from Gfrerer et al., 2014
Wild-type Stages, Structures: Gastrula:Shield (6.0h-8.0h) to Larval:Protruding-mouth (72.0h-96.0h, 3.5mm)
 
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la011406Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa6665 Point Mutation Unknown Splice Site ENU
    sa11703 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa43597 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Targeting reagents:
    DISEASE ASSOCIATED WITH specc1lb HUMAN ORTHOLOG
    Disease Ontology Term OMIM Term OMIM Phenotype ID
    Opitz-GBBB syndrome Opitz GBBB syndrome, type II 145410
    ?Facial clefting, oblique, 1 600251
    Hypertelorism, Teebi type 145420
    Hypertelorism, Teebi type 145420
    DISEASE ASSOCIATED WITH specc1lb VIA EXPERIMENTAL MODELS
    Human Disease Fish Conditions Citations
    orofacial cleft zf393Tg + MO2-specc1lb standard conditions Gfrerer et al., 2014
    WT + MO2-specc1lb standard conditions Gfrerer et al., 2014
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process cranial skeletal system development (more)
    Cellular Component filamentous actin (more)
    GO Terms (all 5)
    TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA specc1lb-201 (1) 3722
    specc1lb-202 (1) 317
    GENE PRODUCT DESCRIPTION No description available
    INTERACTIONS AND PATHWAYS
    ANTIBODIES
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM specc1lb No data available
    MARKER RELATIONSHIPS
    specc1lbContained in: [BAC] CH73-68C19 (1) (order this), DKEY-156G19 (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:XM_005161102 (1)
    Genomic GenBank:CU466275 (1) 104457bp
    Select Tool
    Polypeptide UniProtKB:E7FG55 (1) 1121aa
    Sequence Clusters UniGene:87335 (1)
    Sequence Information (all 16)
    ORTHOLOGY for specc1lb (Chr: 21)
    CITATIONS (18)