ZFIN is now using GRCz12tu for Genomic Data
Gene
atrn
- ID
- ZDB-GENE-090312-21
- Name
- attractin
- Symbol
- atrn Nomenclature History
- Previous Names
-
- si:dkey-259n11.1
- Type
- protein_coding_gene
- Location
- Chr: 13 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- Predicted to enable chromatin binding activity. Predicted to be located in membrane. Predicted to be active in cytoplasm. Is expressed in blastomere; forebrain; midbrain; and otic vesicle. Orthologous to human ATRN (attractin).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 2 figures from Sun et al., 2017
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
- All Phenotype Data
- 3 figures from Sun et al., 2017
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Domain | IPR000742 | EGF-like domain |
| Domain | IPR000859 | CUB domain |
| Domain | IPR001304 | C-type lectin-like |
| Domain | IPR002049 | Laminin-type EGF domain |
| Domain | IPR016201 | PSI domain |
| Domain | IPR034011 | Attractin-like, C-type lectin-like domain |
| Domain | IPR056732 | Attractin, GBD domain |
| Domain | IPR056737 | Attractin/MKLN-like, beta-propeller domain |
| Domain | IPR056863 | Laminin/attractin/netrin-like, EGF domain |
| Family | IPR051568 | LZTR1/Attractin |
| Homologous_superfamily | IPR016186 | C-type lectin-like/link domain superfamily |
| Homologous_superfamily | IPR016187 | C-type lectin fold |
| Homologous_superfamily | IPR035914 | Spermadhesin, CUB domain superfamily |
| Repeat | IPR002165 | Plexin repeat |
Domain Details Per Protein
| Protein | Additional Resources | Length | Attractin, GBD domain | Attractin-like, C-type lectin-like domain | Attractin/MKLN-like, beta-propeller domain | C-type lectin fold | C-type lectin-like | C-type lectin-like/link domain superfamily | CUB domain | EGF-like domain | Laminin/attractin/netrin-like, EGF domain | Laminin-type EGF domain | LZTR1/Attractin | Plexin repeat | PSI domain | Spermadhesin, CUB domain superfamily |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| UniProtKB:B8JI13 | InterPro | 1345 | ||||||||||||||
| UniProtKB:A0AB13A8Y1 | InterPro | 1383 |
- Genome Browsers
Interactions and Pathways
No data available
Plasmids
No data available
- Genome Browsers