Gene
pcnx1
- ID
- ZDB-GENE-081113-6
- Name
- pecanex 1
- Symbol
- pcnx1 Nomenclature History
- Previous Names
-
- pcnx
- Type
- protein_coding_gene
- Location
- Chr: 13 Mapping Details/Browsers
- Description
- Predicted to be located in membrane. Orthologous to human PCNX1 (pecanex 1).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- No data available
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
| Allele | Type | Localization | Consequence | Mutagen | Supplier |
|---|---|---|---|---|---|
| la010346Tg | Transgenic insertion | Unknown | Unknown | DNA | |
| la018588Tg | Transgenic insertion | Unknown | Unknown | DNA | |
| sa14634 | Allele with one point mutation | Unknown | Premature Stop | ENU | |
| sa16965 | Allele with one point mutation | Unknown | Premature Stop | ENU | |
| sa22351 | Allele with one point mutation | Unknown | Premature Stop | ENU | |
| sa28165 | Allele with one point mutation | Unknown | Premature Stop | ENU | |
| sa31944 | Allele with one point mutation | Unknown | Premature Stop | ENU | |
| sa35550 | Allele with one point mutation | Unknown | Premature Stop | ENU |
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No data available
Human Disease
Domain, Family, and Site Summary
Domain Details Per Protein
| Protein | Additional Resources | Length | Pecanex, C-terminal | Protein Pecanex |
|---|---|---|---|---|
| UniProtKB:A0A8M3B880 | InterPro | 2201 | ||
| UniProtKB:A0A8M3B5G2 | InterPro | 2196 | ||
| UniProtKB:A0A8M3AZC3 | InterPro | 2286 | ||
| UniProtKB:A0A8M2B3D9 | InterPro | 2304 | ||
| UniProtKB:A0A8M3BET8 | InterPro | 2309 |
Interactions and Pathways
No data available
Plasmids
No data available
No data available
| Relationship | Marker Type | Marker | Accession Numbers | Citations |
|---|---|---|---|---|
| Contained in | BAC | CH211-259K16 | ZFIN Curated Data | |
| Contained in | BAC | DKEY-157L19 | ZFIN Curated Data |
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| Type | Accession # | Sequence | Length (nt/aa) | Analysis |
|---|---|---|---|---|
| RNA | RefSeq:XM_009307497 (1) | 7961 nt | ||
| Genomic | GenBank:CR354599 (1) | 149455 nt | ||
| Polypeptide | UniProtKB:A0A8M3BET8 (1) | 2309 aa |
- Dina, C., Bouatia-Naji, N., Tucker, N., Delling, F.N., Toomer, K., Durst, R., Perrocheau, M., Fernandez-Friera, L., Solis, J., PROMESA investigators, Le Tourneau, T., Chen, M.H., Probst, V., Bosse, Y., Pibarot, P., Zelenika, D., Lathrop, M., Hercberg, S., Roussel, R., Benjamin, E.J., Bonnet, F., Lo, S.H., Dolmatova, E., Simonet, F., Lecointe, S., Kyndt, F., Redon, R., Le Marec, H., Froguel, P., Ellinor, P.T., Vasan, R.S., Bruneval, P., Markwald, R.R., Norris, R.A., Milan, D.J., Slaugenhaupt, S.A., Levine, R.A., Schott, J.J., Hagege, A.A., Mvp-France, Jeunemaitre, X., Leducq Transatlantic MITRAL Network (2015) Genetic association analyses highlight biological pathways underlying mitral valve prolapse. Nature Genetics. 47(10):1206-11
- Elkon, R., Milon, B., Morrison, L., Shah, M., Vijayakumar, S., Racherla, M., Leitch, C.C., Silipino, L., Hadi, S., Weiss-Gayet, M., Barras, E., Schmid, C.D., Ait-Lounis, A., Barnes, A., Song, Y., Eisenman, D.J., Eliyahu, E., Frolenkov, G.I., Strome, S.E., Durand, B., Zaghloul, N.A., Jones, S.M., Reith, W., Hertzano, R. (2015) RFX transcription factors are essential for hearing in mice. Nature communications. 6:8549
- Varshney, G.K., Lu, J., Gildea, D., Huang, H., Pei, W., Yang, Z., Huang, S.C., Schoenfeld, D.S., Pho, N., Casero, D., Hirase, T., Mosbrook-Davis, D.M., Zhang, S., Jao, L.E., Zhang, B., Woods, I.G., Zimmerman, S., Schier, A.F., Wolfsberg, T., Pellegrini, M., Burgess, S.M., and Lin, S. (2013) A large-scale zebrafish gene knockout resource for the genome-wide study of gene function. Genome research. 23(4):727-735
- Wang, D., Jao, L.E., Zheng, N., Dolan, K., Ivey, J., Zonies, S., Wu, X., Wu, K., Yang, H., Meng, Q., Zhu, Z., Zhang, B., Lin, S., and Burgess, S.M. (2007) Efficient genome-wide mutagenesis of zebrafish genes by retroviral insertions. Proceedings of the National Academy of Sciences of the United States of America. 104(30):12428-12433
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