ZFIN Gene: si:ch211-204d2.4

ZFIN ID: ZDB-GENE-081105-163

ZFIN ID: ZDB-GENE-081105-163

Gene Name:

si:ch211-204d2.4

Gene Symbol:

si:ch211-204d2.4 Nomenclature History

Previous Name:

Gene Type:

protein_coding_gene

Location:

Chr: 8 Mapping Details/Browsers

Description:

Predicted to have PDZ domain binding activity. Predicted to localize to cytoplasm and membrane. Orthologous to human PLEKHA2 (pleckstrin homology domain containing A2).

Genome Resources:

Alliance (1), Gene:100003662 (1), Ensembl(GRCz11):ENSDARG00000078221 (1)

Nomenclature Note: This gene is derived from the zebrafish genome sequencing and annotation project. When more is known about the gene, the current nomenclature will be replaced with more traditional zebrafish gene nomenclature. The prefix 'si:' indicates that this gene is represented by annotated genomic sequence from the Sanger Institute.

GENE EXPRESSION No data available

MUTATIONS AND SEQUENCE TARGETING REAGENTS

Allele	Type	Localization	Consequence	Mutagen	Suppliers
la029422Tg	Transgenic Insertion	Unknown	Unknown	DNA	Zebrafish International Resource Center (ZIRC) (order this)
sa21208	Point Mutation	Unknown	Splice Site	ENU	European Zebrafish Resource Center (EZRC) (order this) Zebrafish International Resource Center (ZIRC) (order this)
sa34317	Point Mutation	Unknown	Premature Stop	ENU	European Zebrafish Resource Center (EZRC) (order this) Zebrafish International Resource Center (ZIRC) (order this)
sa34318	Point Mutation	Unknown	Premature Stop	ENU	European Zebrafish Resource Center (EZRC) (order this) Zebrafish International Resource Center (ZIRC) (order this)

PHENOTYPE No data available

DISEASE ASSOCIATED WITH si:ch211-204d2.4 HUMAN ORTHOLOG No data available

DISEASE ASSOCIATED WITH si:ch211-204d2.4 VIA EXPERIMENTAL MODELS No data available

GENE ONTOLOGY

Ontology	GO Term
Cellular Component	cytoplasm (more)
Molecular Function	PDZ domain binding (more)

GO Terms (all 3)

PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available

TRANSCRIPTS
Type	Name	Length (nt)	Analysis
mRNA	si:ch211-204d2.4-201 (1)	1340	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT

Browsers: UCSC, NCBI, Ensembl, ZFIN

INTERACTIONS AND PATHWAYS

ANTIBODIES No data available

PLASMIDS No data available

CONSTRUCTS WITH SEQUENCES FROM si:ch211-204d2.4 No data available

MARKER RELATIONSHIPS

si:ch211-204d2.4 Contained in:

[BAC] CH211-204D2 (1)

SEQUENCE INFORMATION

Type	Accession #	Length (nt/aa)	Analysis
RNA	RefSeq:NM_001128363 (1)		Select Tool ZFIN BLAST NCBI BLAST MegaBLAST Ensembl UCSC BLAT
Genomic	GenBank:CR847826 (1)	150519 nt	Select Tool MegaBLAST Ensembl
Polypeptide	UniProtKB:A9C3U0 (1)	391 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast

Sequence Information (all 11)

ORTHOLOGY for si:ch211-204d2.4 ( Chr: 8 )

CITATIONS (12)

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