ZFIN is now using GRCz12tu for Genomic Data
Gene
col15a1a
- ID
- ZDB-GENE-080918-1
- Name
- collagen, type XV, alpha 1a
- Symbol
- col15a1a Nomenclature History
- Previous Names
-
- cb605 (1)
- col15a1
- col15a1l
- sb:cb605
- Type
- protein_coding_gene
- Location
- Chr: 24 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- Acts upstream of or within notochord cell differentiation and skeletal muscle tissue development. Is expressed in several structures, including axial mesoderm; central nervous system; chordo neural hinge; integument; and pectoral fin. Orthologous to human COL15A1 (collagen type XV alpha 1 chain).
- Genome Resources
-
- Alliance (1)
- Gene:792366 (1)
- Note
- None
- Comparative Information
-
- All Expression Data
- 8 figures from 2 publications
- Cross-Species Comparison
- High Throughput Data
-
- GEO (1) Expression Atlas (1) Single Cell Expression Atlas (1) Daniocell (1)
- Thisse Expression Data
-
- cb605 (26 images)
Wild Type Expression Summary
- All Phenotype Data
- 6 figures from Pagnon-Minot et al., 2008
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Domain | IPR010515 | Collagenase NC10/endostatin |
| Domain | IPR045463 | Collagen type XV/XVIII, trimerization domain |
| Domain | IPR048287 | Thrombospondin-like, N-terminal domain |
| Homologous_superfamily | IPR013320 | Concanavalin A-like lectin/glucanase domain superfamily |
| Homologous_superfamily | IPR016186 | C-type lectin-like/link domain superfamily |
| Homologous_superfamily | IPR016187 | C-type lectin fold |
| Repeat | IPR008160 | Collagen triple helix repeat |
Domain Details Per Protein
| Protein | Additional Resources | Length | Collagenase NC10/endostatin | Collagen triple helix repeat | Collagen type XV/XVIII, trimerization domain | Concanavalin A-like lectin/glucanase domain superfamily | C-type lectin fold | C-type lectin-like/link domain superfamily | Thrombospondin-like, N-terminal domain |
|---|---|---|---|---|---|---|---|---|---|
| UniProtKB:A0AB32TKF5 | InterPro | 1164 | |||||||
| UniProtKB:A0AC58IT40 | InterPro | 1247 | |||||||
| UniProtKB:A0AC58IT45 | InterPro | 1031 | |||||||
| UniProtKB:A0AC58IT50 | InterPro | 1186 | |||||||
| UniProtKB:A0AC58IT52 | InterPro | 1017 | |||||||
| UniProtKB:A0AC58IT54 | InterPro | 1016 | |||||||
| UniProtKB:A0AC58IT55 | InterPro | 1248 | |||||||
| UniProtKB:A0AC58IT57 | InterPro | 1167 | |||||||
| UniProtKB:A0AC58IT58 | InterPro | 1030 | |||||||
| UniProtKB:A0AC58IT59 | InterPro | 1171 | |||||||
| UniProtKB:A0AC58IT64 | InterPro | 1168 | |||||||
| UniProtKB:A0AC58IT70 | InterPro | 1172 | |||||||
| UniProtKB:A0AC58IT71 | InterPro | 1181 | |||||||
| UniProtKB:A0AC58IT85 | InterPro | 1182 | |||||||
| UniProtKB:A0AC58IT87 | InterPro | 1185 |
- Genome Browsers
Interactions and Pathways
No data available
Plasmids
No data available
- Genome Browsers
- Comparative Orthology
- Alliance