ZFIN ID: ZDB-GENE-080613-2
Gene Name: PR domain containing 16
Gene Symbol: prdm16    Nomenclature History

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Previous Names: fc09g08, wu:fc09g08 (1)

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 8 Mapping Details/Browsers
Description: Predicted to have metal ion binding activity and nucleic acid binding activity. Involved in several processes, including cardiac muscle cell proliferation; embryonic cranial skeleton morphogenesis; and hematopoietic stem cell differentiation. Is expressed in several structures, including hindbrain neural rod; nervous system; pectoral fin bud; pronephric duct; and stomodeum. Orthologous to human PRDM16 (PR/SET domain 16).
Genome Resources: Alliance (1),  Gene:796720 (1), 
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la016416Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • la016417Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • la026615Tg Transgenic Insertion Unknown Unknown DNA
    la026616Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • la026617Tg Transgenic Insertion Unknown Unknown DNA
    la029501Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa14438 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa14462 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa31682 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Sequence Targeting Reagents
    Targeting Reagent Created Alleles Publications
    MO1-prdm16 N/A 1
    MO2-prdm16 N/A 3
    MO3-prdm16 N/A 2
    MO4-prdm16 N/A 1
    DISEASE ASSOCIATED WITH prdm16 HUMAN ORTHOLOG
    Disease Ontology Term Multi-Species Data OMIM Term OMIM Phenotype ID
    Cardiomyopathy, dilated, 1LL 615373
    Left ventricular noncompaction 8 615373
    DISEASE ASSOCIATED WITH prdm16 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process cardiac conduction (more)
    Molecular Function metal ion binding (more)
    GO Terms (all 10)
    PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA si:ch211-263k4.2-202 (1)    Ensembl 2783
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM prdm16 No data available
    MARKER RELATIONSHIPS
    prdm16 Contained in: [BAC] DKEY-149F22 (order this)
    prdm16 Encodes: [EST] fc09g08
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:XM_001922892 (1)
    Genomic GenBank:CR847782 (1) 81735 nt
    Select Tool
    Polypeptide UniProtKB:A5XCD6 (1) 153 aa
    Sequence Information (all 46)
    ORTHOLOGY for prdm16 ( Chr: 8 )
    CITATIONS (25)