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ZIRC
ZFIN ID: ZDB-GENE-080613-2
Gene Name: PR domain containing 16
Gene Symbol: prdm16
Sequence Ontology ID : SO:0000704

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Previous Names: fc09g08, wu:fc09g08 (1)

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(Including Attributions)
Location: Chr: 8 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have metal ion binding activity and nucleic acid binding activity. Involved in several processes, including cardiac muscle cell proliferation; embryonic cranial skeleton morphogenesis;  ...
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la016416Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • la016417Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • la026615Tg Transgenic Insertion Unknown Unknown DNA
    la026616Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • la026617Tg Transgenic Insertion Unknown Unknown DNA
    la029501Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa14438 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa14462 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa31682 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Targeting reagents:
    DISEASE ASSOCIATED WITH prdm16 HUMAN ORTHOLOG
    Disease Ontology Term OMIM Term OMIM Phenotype ID
    Cardiomyopathy, dilated, 1LL 615373
    Left ventricular noncompaction 8 615373
    DISEASE ASSOCIATED WITH prdm16 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process cardiac conduction (more)
    Molecular Function metal ion binding (more)
    GO Terms (all 10)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR013087 (1)
  • InterPro:IPR036236 (1)
  • PROSITE:PS00028 (1)
  • PROSITE:PS50157 (1)
  • Pfam:PF00096 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA si:ch211-263k4.2-202 (1) 2783
    GENE PRODUCT DESCRIPTION No description available
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM prdm16 No data available
    MARKER RELATIONSHIPS
    prdm16Contained in: [BAC] DKEY-149F22 (order this)
    prdm16Encodes: [EST] fc09g08
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:XM_001922892 (1)
    Genomic GenBank:CR847782 (1) 81735bp
    Select Tool
    Polypeptide UniProtKB:A5XCD6 (1) 153aa
    Sequence Clusters UniGene:105603 (1)
    Sequence Information (all 48)
    OTHER prdm16 GENE PAGES
  • Alliance (1)
  • Gene:796720 (1)
  • VEGA:OTTDARG00000027042 (1)
  • ORTHOLOGY for prdm16 (Chr: 8)
    CITATIONS (24)