Gene

prdm16

ID

ZDB-GENE-080613-2

Name

PR domain containing 16

Symbol

prdm16 Nomenclature History

Previous Names

fc09g08
si:ch211-263k4.2
wu:fc09g08 (1)

Type

protein_coding_gene

Location

Chr: 8 Mapping Details/Browsers

Description

Predicted to have metal ion binding activity. Involved in several processes, including cardiac muscle cell proliferation; embryonic cranial skeleton morphogenesis; and hematopoietic stem cell differentiation. Is expressed in several structures, including hindbrain neural rod; nervous system; pectoral fin bud; pronephric duct; and stomodeum. Orthologous to human PRDM16 (PR/SET domain 16).

Genome Resources

Note

None

Expression

All Expression Data

5 figures from 4 publications

Cross-Species Comparison

High Throughput Data

Expression Atlas

Thisse Expression Data

Wild Type Expression Summary

Phenotype

All Phenotype Data: 5 figures from 3 publications
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With prdm16 Human Ortholog

Disease Ontology Term	Multi-Species Data	OMIM Term	OMIM Phenotype ID
		Cardiomyopathy, dilated, 1LL	615373
		Left ventricular noncompaction 8	615373

Associated With prdm16 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR013087	Zinc finger C2H2-type
Homologous_superfamily	IPR036236	Zinc finger C2H2 superfamily

Domain Details Per Protein

Protein	Length	Zinc finger C2H2 superfamily	Zinc finger C2H2-type
UniProtKB:A0A2R8QHN2 InterPro	214
UniProtKB:A5XCD6 InterPro	153
UniProtKB:B8A5T9 InterPro	927
UniProtKB:B8JHX5 InterPro	129
UniProtKB:F1Q833 InterPro	908

Transcripts

Genome Browsers

Ensembl

ZFIN

Type	Name	Length (nt)	Analysis
mRNA	si:ch211-263k4.2-202 (1) Ensembl	2783 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Gene Tree: Ensembl

Citations