Gene

phf20a

ID

ZDB-GENE-070912-270

Name

PHD finger protein 20, a

Symbol

phf20a Nomenclature History

Previous Names

si:ch211-274p22.2

Type

protein_coding_gene

Location

Chr: 11 Mapping Details/Browsers

Description

Predicted to have metal ion binding activity. Predicted to be involved in histone acetylation and regulation of transcription by RNA polymerase II. Predicted to localize to MLL1 complex and NSL complex. Orthologous to human PHF20 (PHD finger protein 20).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

No data available

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With phf20a Human Ortholog

No data available

Associated With phf20a Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Conserved_site	IPR019786	Zinc finger, PHD-type, conserved site
Domain	IPR001965	Zinc finger, PHD-type
Domain	IPR002999	Tudor domain
Domain	IPR013087	Zinc finger C2H2-type
Domain	IPR041297	DNA repair protein Crb2, Tudor domain
Family	IPR043449	PHD finger protein 20-like
Homologous_superfamily	IPR011011	Zinc finger, FYVE/PHD-type
Homologous_superfamily	IPR013083	Zinc finger, RING/FYVE/PHD-type
Repeat	IPR004092	Mbt repeat

Domain Details Per Protein

Protein	Length	DNA repair protein Crb2, Tudor domain	Mbt repeat	PHD finger protein 20-like	Tudor domain	Zinc finger C2H2-type	Zinc finger, FYVE/PHD-type	Zinc finger, PHD-type	Zinc finger, PHD-type, conserved site	Zinc finger, RING/FYVE/PHD-type
UniProtKB:A0A8M9QDM8 InterPro	932
UniProtKB:A0A8M9QM11 InterPro	931
UniProtKB:A0A8M9PAS5 InterPro	929

Transcripts

Genome Browsers

NCBI

Ensembl

ZFIN

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	phf20a-201 (1) Ensembl	Havana	4361 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations