Gene

nid1b

ID
ZDB-GENE-070802-3
Name
nidogen 1b
Symbol
nid1b Nomenclature History
Previous Names
  • id:ibd5062
Type
protein_coding_gene
Location
Chr: 11 Mapping Details/Browsers
Description
Predicted to have calcium ion binding activity. Predicted to be involved in cell-matrix adhesion. Predicted to localize to basement membrane; extracellular region; and membrane. Is expressed in brain; head; neural crest; and optic fissure. Orthologous to human NID1 (nidogen 1).
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
9 figures from 5 publications
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
Wild Type Expression Summary
Phenotype
All Phenotype Data
1 Figure from Nicholas et al., 2019
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
Sequence Targeting Reagents
Human Disease
Associated With nid1b Human Ortholog
No data available
Associated With nid1b Via Experimental Models
No data available
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Conserved_site IPR018097 EGF-like calcium-binding, conserved site
Domain IPR000716 Thyroglobulin type-1
Domain IPR000742 EGF-like domain
Domain IPR001881 EGF-like calcium-binding domain
Domain IPR003886 NIDO domain
Domain IPR006605 G2 nidogen/fibulin G2F
Domain IPR024731 EGF domain
Homologous_superfamily IPR009017 Green fluorescent protein
Homologous_superfamily IPR009030 Growth factor receptor cysteine-rich domain superfamily
Homologous_superfamily IPR011042 Six-bladed beta-propeller, TolB-like
Homologous_superfamily IPR036857 Thyroglobulin type-1 superfamily
PTM IPR000152 EGF-type aspartate/asparagine hydroxylation site
Repeat IPR000033 LDLR class B repeat
Domain Details Per Protein
Protein Length EGF domain EGF-like calcium-binding, conserved site EGF-like calcium-binding domain EGF-like domain EGF-type aspartate/asparagine hydroxylation site G2 nidogen/fibulin G2F Green fluorescent protein Growth factor receptor cysteine-rich domain superfamily LDLR class B repeat NIDO domain Six-bladed beta-propeller, TolB-like Thyroglobulin type-1 Thyroglobulin type-1 superfamily
UniProtKB:A0A2R8QHX0 1199
UniProtKB:A0A140LFV3 235
UniProtKB:A0A0G2L836 1242
UniProtKB:A0A140LFY0 1157
UniProtKB:A0A2R8QLL7 1200
Transcripts
Genome Browsers
Interactions and Pathways
No data available
Antibodies
No data available
Plasmids
No data available
Constructs
Marker Relationships
Sequences
Orthology
Comparative Orthology
Alliance
Gene Tree
Ensembl
Citations