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Gene

smarca1

ID
ZDB-GENE-070705-296
Name
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1
Symbol
smarca1 Nomenclature History
Previous Names
  • si:dkey-148b12.1 (1)
Type
protein_coding_gene
Location
Chr: 5 Mapping Details/Browsers
Description
Predicted to enable ATPase, acting on DNA and DNA binding activity. Acts upstream of or within neural plate anterior/posterior regionalization and primitive erythrocyte differentiation. Predicted to be active in nucleus. Orthologous to human SMARCA1 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1).
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
1 figure from Thisse et al., 2005
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
Wild Type Expression Summary
Phenotype
All Phenotype Data
4 figures from Huang et al., 2013
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
Sequence Targeting Reagents
Human Disease
Associated With smarca1 Human Ortholog
No data available
Associated With smarca1 Via Experimental Models
No data available
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Domain IPR000330 SNF2-related domain
Domain IPR001005 SANT/Myb domain
Domain IPR001650 Helicase, C-terminal
Domain IPR014001 Helicase superfamily 1/2, ATP-binding domain
Domain IPR015194 ISWI, HAND domain
Domain IPR015195 SLIDE domain
Domain IPR017884 SANT domain
Domain IPR020838 DBINO domain
Homologous_superfamily IPR009057 Homeobox-like domain superfamily
Homologous_superfamily IPR027417 P-loop containing nucleoside triphosphate hydrolase
Homologous_superfamily IPR036306 ISWI, HAND domain superfamily
Homologous_superfamily IPR038718 SNF2-like, N-terminal domain superfamily
Domain Details Per Protein
Protein Length DBINO domain Helicase, C-terminal Helicase superfamily 1/2, ATP-binding domain Homeobox-like domain superfamily ISWI, HAND domain ISWI, HAND domain superfamily P-loop containing nucleoside triphosphate hydrolase SANT domain SANT/Myb domain SLIDE domain SNF2-like, N-terminal domain superfamily SNF2-related domain
UniProtKB:A5WUY4 1036
Transcripts
Genome Browsers
Interactions and Pathways
No data available
Antibodies
No data available
Plasmids
No data available
Constructs
Marker Relationships
Sequences
Orthology
Comparative Orthology
Alliance
Gene Tree
Ensembl
Citations