Gene

cntnap5b

ID

ZDB-GENE-070705-209

Name

contactin associated protein family member 5b

Symbol

cntnap5b Nomenclature History

Previous Names

si:ch73-150k18.1 (1)

Type

protein_coding_gene

Location

Chr: 22 Mapping Details/Browsers

Description

Predicted to localize to integral component of membrane. Orthologous to human CNTNAP5 (contactin associated protein family member 5).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

No data available

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With cntnap5b Human Ortholog

No data available

Associated With cntnap5b Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR000421	Coagulation factor 5/8, C-terminal domain
Domain	IPR000742	EGF-like domain
Domain	IPR001791	Laminin G domain
Domain	IPR002181	Fibrinogen, alpha/beta/gamma chain, C-terminal globular domain
Family	IPR050372	Neurexin-related cell adhesion and synaptic protein
Homologous_superfamily	IPR008979	Galactose-binding-like domain superfamily
Homologous_superfamily	IPR013320	Concanavalin A-like lectin/glucanase domain superfamily
Homologous_superfamily	IPR036056	Fibrinogen-like, C-terminal

Domain Details Per Protein

Protein	Length	Coagulation factor 5/8, C-terminal domain	Concanavalin A-like lectin/glucanase domain superfamily	EGF-like domain	Fibrinogen, alpha/beta/gamma chain, C-terminal globular domain	Fibrinogen-like, C-terminal	Galactose-binding-like domain superfamily	Laminin G domain	Neurexin-related cell adhesion and synaptic protein
UniProtKB:A0A8M3AUM4 InterPro	1306
UniProtKB:A0A8M3AM72 InterPro	996

Transcripts

Genome Browsers

NCBI

Ensembl

ZFIN

Type	Name	Annotation Method	Has Havana Data	Length (nt)	Analysis
mRNA	cntnap5b-201 (1) Ensembl	Ensembl		7,892 nt	Select Tool ZFIN BLAST
mRNA	cntnap5b-202 (1) Ensembl	Ensembl		521 nt	Select Tool

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations