Gene

ablim3

ID

ZDB-GENE-070112-1122

Name

actin binding LIM protein family, member 3

Symbol

ablim3 Nomenclature History

Previous Names

fb51g06
im:7152284
si:dkey-23o10.3
wu:fb51g06 (1)
zgc:158673
zgc:198293

Type

protein_coding_gene

Location

Chr: 14 Mapping Details/Browsers

Description

Predicted to have actin filament binding activity. Predicted to be involved in cilium assembly and lamellipodium assembly. Predicted to localize to stress fiber. Is expressed in notochord and somite. Orthologous to human ABLIM3 (actin binding LIM protein family member 3).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

3 figures from Thisse et al., 2004

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

IMAGE:7152284 (4 images)

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With ablim3 Human Ortholog

No data available

Associated With ablim3 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR001781	Zinc finger, LIM-type
Domain	IPR003128	Villin headpiece
Domain	IPR032402	Putative adherens-junction anchoring domain
Family	IPR051618	Actin-binding LIM
Homologous_superfamily	IPR036886	Villin headpiece domain superfamily

Domain Details Per Protein

Protein	Length	Actin-binding LIM	Putative adherens-junction anchoring domain	Villin headpiece	Villin headpiece domain superfamily	Zinc finger, LIM-type
UniProtKB:A0A8M9QP71 InterPro	588
UniProtKB:A0A8M9QGG2 InterPro	638
UniProtKB:H0WEN9 InterPro	632
UniProtKB:A1L269 InterPro	683
UniProtKB:A0A8M9QB40 InterPro	690
UniProtKB:B7ZVF6 InterPro	631
UniProtKB:A0A0R4IXJ5 InterPro	684

Transcripts

Genome Browsers

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	ablim3-202 (1) Ensembl	Havana	3959 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
mRNA	ablim3-204 (1) Ensembl	Havana	865 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
mRNA	ablim3-207 (1) Ensembl	Havana	2128 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
ncRNA	ablim3-002 (1) Ensembl	Havana	606 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
ncRNA	ottdart00000038856 (1) Ensembl	Havana	581 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations