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ZIRC
ZFIN ID: ZDB-GENE-061103-160
Gene Name: secretogranin II (chromogranin C), b
Gene Symbol: scg2b
Sequence Ontology ID : SO:0000704

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Previous Names: sgIIb (1), wu:fj34e01, zgc:153925

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(Including Attributions)
Location: Chr: 2 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Involved in regulation of sprouting angiogenesis. Predicted to localize to the secretory granule. Orthologous to human SCG2 (secretogranin II).
GENE EXPRESSION
All Expression Data: 3 figures from Tao et al., 2018
Wild-type Stages, Structures: Segmentation:10-13 somites (14.0h-16.0h) to Larval:Day 5 (120.0h-144.0h, 3.9mm, 6 teeth)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
ihb603 Indel Unknown Unknown TALEN
ihb604 Small Deletion Unknown Unknown TALEN
sa19871 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa19872 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Targeting reagents:
    DISEASE ASSOCIATED WITH scg2b HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH scg2b VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process regulation of sprouting angiogenesis (more)
    Cellular Component secretory granule (more)
    GO Terms (all 2)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001990 (1)
  • InterPro:IPR038858 (1)
  • Pfam:PF01271 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA scg2b-201 (1) 2627
    scg2b-202 (1) 768
    GENE PRODUCT DESCRIPTION No description available
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM scg2b No data available
    MARKER RELATIONSHIPS
    scg2bContained in: [BAC] CH211-165B10 (1) (order this)
    scg2bEncodes: [EST] fj34e01
    [cDNA] MGC:153925 (1) (order this), MGC:191589 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001077748 (1) 2626bp
    Genomic GenBank:CU467824 (1) 66918bp
    Select Tool
    Polypeptide UniProtKB:A0JMK6 (1) 583aa
    Sequence Clusters UniGene:27747 (1)
    Sequence Information (all 16)
    ORTHOLOGY for scg2b (Chr: 2)
    CITATIONS (19)