ZFIN is now using GRCz12tu for Genomic Data
Gene
rhot1b
- ID
- ZDB-GENE-061009-52
- Name
- ras homolog family member T1
- Symbol
- rhot1b Nomenclature History
- Previous Names
-
- Rhot1a (1)
- si:dkeyp-97g3.6
- Type
- protein_coding_gene
- Location
- Chr: 6 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- Predicted to enable GTP binding activity and GTPase activity. Predicted to be involved in mitochondrion organization and mitochondrion transport along microtubule. Predicted to act upstream of or within small GTPase-mediated signal transduction. Located in mitochondrion. Is expressed in head. Orthologous to human RHOT1 (ras homolog family member T1).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 1 figure from Hollister et al., 2016
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
- All Phenotype Data
- 1 Figure from Hollister et al., 2016
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Binding_site | IPR018247 | EF-Hand 1, calcium-binding site |
| Domain | IPR002048 | EF-hand domain |
| Domain | IPR005225 | Small GTP-binding domain |
| Domain | IPR013566 | Mitochondrial Rho GTPase 1/3, EF hand associated, type-1 |
| Domain | IPR013567 | EF hand associated, type-2 |
| Domain | IPR020860 | MIRO domain |
| Family | IPR001806 | Small GTPase |
| Family | IPR021181 | Mitochondrial Rho GTPase |
| Family | IPR052266 | Mitochondrial Rho GTPase/EF-hand domain-containing protein |
| Homologous_superfamily | IPR011992 | EF-hand domain pair |
| Homologous_superfamily | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
Domain Details Per Protein
| Protein | Additional Resources | Length | EF-Hand 1, calcium-binding site | EF hand associated, type-2 | EF-hand domain | EF-hand domain pair | MIRO domain | Mitochondrial Rho GTPase | Mitochondrial Rho GTPase 1/3, EF hand associated, type-1 | Mitochondrial Rho GTPase/EF-hand domain-containing protein | P-loop containing nucleoside triphosphate hydrolase | Small GTPase | Small GTP-binding domain |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| UniProtKB:A0A8M9PZT5 | InterPro | 626 | |||||||||||
| UniProtKB:B3DI88 | InterPro | 660 | |||||||||||
| UniProtKB:A0A8M9QFG5 | InterPro | 480 | |||||||||||
| UniProtKB:A0A8M2BDN6 | InterPro | 659 | |||||||||||
| UniProtKB:A0A8M9Q658 | InterPro | 619 |
- Genome Browsers
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
rhot1b-201
(1)
|
Ensembl | 2,707 nt |
Interactions and Pathways
No data available
Plasmids
No data available
- Genome Browsers