Gene

tyw5

ID

ZDB-GENE-060929-894

Name

tRNA-yW synthesizing protein 5

Symbol

tyw5 Nomenclature History

Previous Names

im:7148946
zgc:154110

Type

protein_coding_gene

Location

Chr: 9 Mapping Details/Browsers

Description

Predicted to have several functions, including iron ion binding activity; protein homodimerization activity; and tRNA binding activity. Predicted to be involved in wybutosine biosynthetic process. Is expressed in immature eye; midbrain; optic vesicle; and retina. Orthologous to human TYW5 (tRNA-yW synthesizing protein 5).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

6 figures from Thisse et al., 2004

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

IMAGE:7148946 (6 images)

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With tyw5 Human Ortholog

No data available

Associated With tyw5 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR003347	JmjC domain
Domain	IPR041667	Cupin-like domain 8

Domain Details Per Protein

Protein	Length	Cupin-like domain 8	JmjC domain
UniProtKB:Q08BV2 InterPro	326

Transcripts

Genome Browsers

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	tyw5-201 (1) Ensembl	Ensembl	1,870 nt	Select Tool
ncRNA	tyw5-002 (1) Ensembl	Ensembl	770 nt	Select Tool
ncRNA	tyw5-003 (1) Ensembl	Ensembl	941 nt	Select Tool
ncRNA	tyw5-004 (1) Ensembl	Ensembl	322 nt	Select Tool

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations