Gene

rabggta

ID

ZDB-GENE-060929-1042

Name

Rab geranylgeranyltransferase subunit alpha

Symbol

rabggta Nomenclature History

Previous Names

zgc:153107

Type

protein_coding_gene

Location

Chr: 23 Mapping Details/Browsers

Description

Predicted to enable protein prenyltransferase activity and zinc ion binding activity. Predicted to contribute to Rab geranylgeranyltransferase activity. Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport. Predicted to act upstream of or within protein prenylation. Predicted to be part of Rab-protein geranylgeranyltransferase complex. Predicted to be active in cytoplasm. Orthologous to human RABGGTA (Rab geranylgeranyltransferase subunit alpha).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

1 figure from Hsu et al., 2013

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With rabggta Human Ortholog

No data available

Associated With rabggta Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR009087	Rab geranylgeranyltransferase, alpha subunit, insert-domain
Homologous_superfamily	IPR032675	Leucine-rich repeat domain superfamily
Homologous_superfamily	IPR036254	Rab geranylgeranyltransferase, alpha subunit, insert-domain superfamily
Repeat	IPR001611	Leucine-rich repeat
Repeat	IPR002088	Protein prenyltransferase, alpha subunit

Domain Details Per Protein

Protein	Additional Resources	Length	Leucine-rich repeat	Leucine-rich repeat domain superfamily	Protein prenyltransferase, alpha subunit	Rab geranylgeranyltransferase, alpha subunit, insert-domain	Rab geranylgeranyltransferase, alpha subunit, insert-domain superfamily
UniProtKB:Q08CG5	InterPro	580
UniProtKB:A0A8M1NBE9	InterPro	580

Transcripts

Genome Browsers

NCBI

Type	Name	Annotation Method	Has Havana Data	Length (nt)	Analysis
mRNA	rabggta-201 (1) Ensembl	Ensembl		2,995 nt	Select Tool ZFIN BLAST
ncRNA	rabggta-002 (1) Ensembl	Ensembl		881 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations