Gene

rabggta

ID
ZDB-GENE-060929-1042
Name
Rab geranylgeranyltransferase subunit alpha
Symbol
rabggta Nomenclature History
Previous Names
  • zgc:153107
Type
protein_coding_gene
Location
Chr: 23 Mapping Details/Browsers
Description
Predicted to enable protein prenyltransferase activity and zinc ion binding activity. Predicted to contribute to Rab geranylgeranyltransferase activity. Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport. Predicted to act upstream of or within protein prenylation. Predicted to be part of Rab-protein geranylgeranyltransferase complex. Predicted to be active in cytoplasm. Orthologous to human RABGGTA (Rab geranylgeranyltransferase subunit alpha).
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
1 figure from Hsu et al., 2013
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
No data available
Wild Type Expression Summary
Phenotype
All Phenotype Data
No data available
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
Allele Type Localization Consequence Mutagen Supplier
sa6721Allele with one point mutationUnknownPremature StopENU
sa12408Allele with one point mutationUnknownPremature StopENU
sa24239Allele with one point mutationUnknownSplice SiteENU
sa31078Allele with one point mutationUnknownPremature StopENU
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Sequence Targeting Reagents
No data available
Human Disease
Associated With rabggta Human Ortholog
No data available
Associated With rabggta Via Experimental Models
No data available
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Domain IPR009087 Rab geranylgeranyltransferase, alpha subunit, insert-domain
Homologous_superfamily IPR032675 Leucine-rich repeat domain superfamily
Homologous_superfamily IPR036254 Rab geranylgeranyltransferase, alpha subunit, insert-domain superfamily
Repeat IPR001611 Leucine-rich repeat
Repeat IPR002088 Protein prenyltransferase, alpha subunit
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Domain Details Per Protein
Protein Additional Resources Length Leucine-rich repeat Leucine-rich repeat domain superfamily Protein prenyltransferase, alpha subunit Rab geranylgeranyltransferase, alpha subunit, insert-domain Rab geranylgeranyltransferase, alpha subunit, insert-domain superfamily
UniProtKB:Q08CG5 InterPro 580
UniProtKB:A0A8M1NBE9 InterPro 580
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Transcripts
Genome Browsers
Genome Build: GRCz11Chromosome: 23
Type Name Annotation Method Has Havana Data Length (nt) Analysis
mRNA rabggta-201 (1) Ensembl 2,995 nt
ncRNA rabggta-002 (1) Ensembl 881 nt
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Interactions and Pathways
No data available
Antibodies
No data available
Plasmids
No data available
Constructs
No data available
Marker Relationships
Relationship Marker Type Marker Accession Numbers Citations
Contained inBACCH73-212E20ZFIN Curated Data
EncodescDNAMGC:153107ZFIN Curated Data
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Sequences
Orthology
Comparative Orthology
Alliance
Gene Tree
Ensembl
Species Symbol Chromosome Accession # Evidence
HumanRABGGTA14
Conserved genome location (synteny) (1)
Amino acid sequence comparison (1)
MouseRabggta14
Amino acid sequence comparison (1)
Conserved genome location (synteny) (1)
Citations
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