Gene
sh3pxd2b
- ID
- ZDB-GENE-060810-52
- Name
- SH3 and PX domains 2B
- Symbol
- sh3pxd2b Nomenclature History
- Previous Names
-
- im:7155315
- wu:fb09f08
- Type
- protein_coding_gene
- Location
- Chr: 21 Mapping Details/Browsers
- Description
- Predicted to enable superoxide-generating NADPH oxidase activator activity. Acts upstream of or within bone morphogenesis and connective tissue development. Predicted to be located in podosome. Predicted to be active in cytoplasm. Is expressed in several structures, including central nervous system; notochord; otic vesicle; segmental plate; and tail bud. Used to study Frank-Ter Haar syndrome. Human ortholog(s) of this gene implicated in Frank-Ter Haar syndrome. Orthologous to human SH3PXD2B (SH3 and PX domains 2B).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 7 figures from 2 publications
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
-
- IMAGE:7155315 (27 images)
Wild Type Expression Summary
- All Phenotype Data
- 3 figures from de Vos et al., 2020
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
Disease Ontology Term | Multi-Species Data | OMIM Term | OMIM Phenotype ID |
---|---|---|---|
Frank-Ter Haar syndrome | Alliance | Frank-ter Haar syndrome | 249420 |
Human Disease | Fish | Conditions | Citations |
---|---|---|---|
Frank-Ter Haar syndrome | sh3pxd2bzf3422/zf3422 (AB) | standard conditions | de Vos et al., 2020 |
Domain, Family, and Site Summary
Type | InterPro ID | Name |
---|---|---|
Domain | IPR001452 | SH3 domain |
Domain | IPR001683 | Phox homology |
Domain | IPR035477 | SH3PXD2B, SH3 domain 1 |
Domain | IPR035478 | SH3PXD2B, SH3 domain 2 |
Domain | IPR035479 | SH3PXD2B, SH3 domain 3 |
Domain | IPR035480 | SH3PXD2B, SH3 domain 4 |
Domain | IPR037961 | SH3PXD2, PX domain |
Family | IPR001655 | Neutrophil cytosol factor 1 |
Family | IPR051228 | NADPH Oxidase and PX Domain-Containing |
Homologous_superfamily | IPR036028 | SH3-like domain superfamily |
Homologous_superfamily | IPR036871 | PX domain superfamily |
Domain Details Per Protein
Protein | Length | NADPH Oxidase and PX Domain-Containing | Neutrophil cytosol factor 1 | Phox homology | PX domain superfamily | SH3 domain | SH3-like domain superfamily | SH3PXD2B, SH3 domain 1 | SH3PXD2B, SH3 domain 2 | SH3PXD2B, SH3 domain 3 | SH3PXD2B, SH3 domain 4 | SH3PXD2, PX domain |
---|---|---|---|---|---|---|---|---|---|---|---|---|
UniProtKB:A0A0R4IMX7
|
880 | |||||||||||
UniProtKB:A0A8M9PRL0
|
879 | |||||||||||
UniProtKB:A0A0R4IRP5
|
868 |
Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
---|---|---|---|---|---|
mRNA |
sh3pxd2b-202
(1)
|
Ensembl | 2,833 nt | ||
mRNA |
sh3pxd2b-203
(1)
|
Ensembl | 4,561 nt | ||
ncRNA |
sh3pxd2b-002
(1)
|
Ensembl | 535 nt |
Interactions and Pathways
No data available
Plasmids
No data available