Gene

rad54b

ID
ZDB-GENE-060810-50
Name
RAD54 homolog B
Symbol
rad54b Nomenclature History
Previous Names
  • im:7137737
  • im:7153525
Type
protein_coding_gene
Location
Chr: 16 Mapping Details/Browsers
Description
Predicted to have DNA translocase activity. Predicted to be involved in double-strand break repair via homologous recombination and reciprocal meiotic recombination. Predicted to localize to nucleus. Human ortholog(s) of this gene implicated in colorectal cancer and non-Hodgkin lymphoma. Orthologous to human RAD54B (RAD54 homolog B).
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
3 figures from 2 publications
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
Wild Type Expression Summary
Phenotype
All Phenotype Data
No data available
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
Sequence Targeting Reagents
Human Disease
Associated With rad54b Human Ortholog
Disease Ontology Term Multi-Species Data OMIM Term OMIM Phenotype ID
Colon cancer, somatic 114500
Lymphoma, non-Hodgkin, somatic 605027
Associated With rad54b Via Experimental Models
No data available
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Domain IPR000330 SNF2, N-terminal
Domain IPR001650 Helicase, C-terminal domain-like
Domain IPR014001 Helicase superfamily 1/2, ATP-binding domain
Domain IPR049730 SNF2/RAD5-like, C-terminal helicase domain
Homologous_superfamily IPR027417 P-loop containing nucleoside triphosphate hydrolase
Homologous_superfamily IPR038718 SNF2-like, N-terminal domain superfamily
Domain Details Per Protein
Protein Length Helicase, C-terminal domain-like Helicase superfamily 1/2, ATP-binding domain P-loop containing nucleoside triphosphate hydrolase SNF2-like, N-terminal domain superfamily SNF2, N-terminal SNF2/RAD5-like, C-terminal helicase domain
UniProtKB:E9QHY4 917
Transcripts
Genome Browsers
Type Name Annotation Method Length (nt) Analysis
mRNA rad54b-201 (1) Havana 3229 nt
mRNA rad54b-202 (1) Ensembl 1926 nt
mRNA rad54b-203 (1) Ensembl 2532 nt
mRNA rad54b-204 (1) Ensembl 2571 nt
mRNA rad54b-205 (1) Ensembl 2535 nt
Interactions and Pathways
No data available
Antibodies
No data available
Plasmids
No data available
Constructs
Marker Relationships
Sequences
Orthology
Comparative Orthology
Alliance
Gene Tree
Ensembl
Citations