Gene
ptbp2b
- ID
- ZDB-GENE-060810-49
- Name
- polypyrimidine tract binding protein 2b
- Symbol
- ptbp2b Nomenclature History
- Previous Names
-
- ptbp2
- im:7153495
- si:ch211-160l17.2
- wu:fa08f05
- wu:fc05d10
- Type
- protein_coding_gene
- Location
- Chr: 2 Mapping Details/Browsers
- Description
- Predicted to enable mRNA binding activity. Predicted to be involved in regulation of RNA splicing. Predicted to be active in nucleus. Is expressed in central nervous system; cranial ganglion; retinal ganglion cell layer; and retinal inner nuclear layer. Orthologous to human PTBP2 (polypyrimidine tract binding protein 2).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 6 figures from Thisse et al., 2004
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
-
- IMAGE:7153495 (8 images)
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
Type | InterPro ID | Name |
---|---|---|
Domain | IPR000504 | RNA recognition motif domain |
Domain | IPR021790 | PTBP1-like, RNA recognition motif 2 |
Domain | IPR035002 | PTBP2, RNA recognition motif 1 |
Family | IPR006536 | HnRNP-L/PTB |
Homologous_superfamily | IPR012677 | Nucleotide-binding alpha-beta plait domain superfamily |
Homologous_superfamily | IPR035979 | RNA-binding domain superfamily |
Domain Details Per Protein
Protein | Additional Resources | Length | HnRNP-L/PTB | Nucleotide-binding alpha-beta plait domain superfamily | PTBP1-like, RNA recognition motif 2 | PTBP2, RNA recognition motif 1 | RNA-binding domain superfamily | RNA recognition motif domain |
---|---|---|---|---|---|---|---|---|
UniProtKB:A0A8M2BAH6 | InterPro | 518 | ||||||
UniProtKB:A5PM68 | InterPro | 538 |
Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
---|---|---|---|---|---|
aberrant processed transcript |
ptbp2b-203
(1)
|
Ensembl | 759 nt | ||
mRNA |
ptbp2b-201
(1)
|
Ensembl | 2,900 nt | ||
mRNA |
ptbp2b-204
(1)
|
Ensembl | 281 nt | ||
ncRNA |
ptbp2b-003
(1)
|
Ensembl | 518 nt |
Interactions and Pathways
No data available
Plasmids
No data available