Gene

tbc1d9

ID

ZDB-GENE-060810-33

Name

TBC1 domain family, member 9 (with GRAM domain)

Symbol

tbc1d9 Nomenclature History

Previous Names

im:7148955
si:ch211-199c19.3

Type

protein_coding_gene

Location

Chr: 1 Mapping Details/Browsers

Description

Predicted to have GTPase activator activity and Rab GTPase binding activity. Predicted to be involved in activation of GTPase activity and intracellular protein transport. Is expressed in EVL; central nervous system; cranial ganglion; and trigeminal placode. Orthologous to human TBC1D9 (TBC1 domain family member 9).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

6 figures from Thisse et al., 2004

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Thisse Expression Data

IMAGE:7148955 (12 images)

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With tbc1d9 Human Ortholog

No data available

Associated With tbc1d9 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR000195	Rab-GAP-TBC domain
Domain	IPR002048	EF-hand domain
Domain	IPR004182	GRAM domain
Domain	IPR036014	TCB1D9/TCB1D9B, PH-GRAM domain 1
Domain	IPR036017	TCB1D9/TCB1D9B, PH-GRAM domain 2
Homologous_superfamily	IPR011992	EF-hand domain pair
Homologous_superfamily	IPR011993	PH-like domain superfamily
Homologous_superfamily	IPR035969	Rab-GAP-TBC domain superfamily

Domain Details Per Protein

Protein	Length	EF-hand domain	EF-hand domain pair	GRAM domain	PH-like domain superfamily	Rab-GAP-TBC domain	Rab-GAP-TBC domain superfamily	TCB1D9/TCB1D9B, PH-GRAM domain 1	TCB1D9/TCB1D9B, PH-GRAM domain 2
UniProtKB:F1Q7J9 InterPro	1248

Transcripts

Genome Browsers

NCBI

Ensembl

ZFIN

Type	Name	Annotation Method	Has Havana Data	Length (nt)	Analysis
mRNA	tbc1d9-203 (1) Ensembl	Ensembl		4,072 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance

Citations