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ZIRC
ZFIN ID: ZDB-GENE-060531-166
Gene Name: syntaxin binding protein 1b
Gene Symbol: stxbp1b
Sequence Ontology ID : SO:0000704

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Previous Name: si:rp71-10d23.3

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(Including Attributions)
Location: Chr: 5 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to be involved in vesicle docking involved in exocytosis. Used to study early infantile epileptic encephalopathy. Human ortholog(s) of this gene implicated in West syndrome and early  ...
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
s3001 Small Deletion Unknown Start Loss CRISPR
Targeting reagents:
PHENOTYPE
Data: 2 figures from Grone et al., 2016
Observed in:
DISEASE ASSOCIATED WITH stxbp1b HUMAN ORTHOLOG
Disease Ontology Term OMIM Term OMIM Phenotype ID
early infantile epileptic encephalopathy 4 Epileptic encephalopathy, early infantile, 4 612164
DISEASE ASSOCIATED WITH stxbp1b VIA EXPERIMENTAL MODELS
Human Disease Fish Conditions Citations
early infantile epileptic encephalopathy stxbp1bs3001/s3001(WIK) standard conditions Grone et al., 2016
GENE ONTOLOGY
Ontology GO Term
Biological Process vesicle docking involved in exocytosis (more)
GO Terms (all 2)
PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001619 (1)
  • InterPro:IPR027482 (1)
  • InterPro:IPR036045 (1)
  • Pfam:PF00995 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA stxbp1b-201 (1) 4713
     Withdrawn Transcriptsextinct
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM stxbp1b No data available
    MARKER RELATIONSHIPS
    stxbp1bContained in: [BAC] CH73-244M7 (1) (order this), RP71-10D23 (1) (order this)
    stxbp1bEncodes: [cDNA] MGC:198253 (1) (order this), MGC:198279 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001089376 (1) 2354bp
    Genomic GenBank:BX470066 (1) 178499bp
    Select Tool
    Polypeptide UniProtKB:A2BGE0 (1) 605aa
    Sequence Clusters UniGene:65703 (1)
    Sequence Information (all 19)
    ORTHOLOGY for stxbp1b (Chr: 5)
    CITATIONS (21)