Gene

arvcfb

ID

ZDB-GENE-060526-60

Name

ARVCF delta catenin family member b

Symbol

arvcfb Nomenclature History

Previous Names

si:ch211-173n20.1 (1)
wu:fc11a08

Type

protein_coding_gene

Location

Chr: 5 Mapping Details/Browsers

Description

Predicted to enable cadherin binding activity. Predicted to be involved in cell-cell adhesion. Predicted to act upstream of or within cell adhesion. Predicted to be active in several cellular components, including adherens junction; nucleus; and plasma membrane. Human ortholog(s) of this gene implicated in DiGeorge syndrome. Orthologous to human ARVCF (ARVCF delta catenin family member).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

2 figures from Hsu et al., 2012

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With arvcfb Human Ortholog

No data available

Associated With arvcfb Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Family	IPR028435	Plakophilin/Delta catenin
Homologous_superfamily	IPR011989	Armadillo-like helical
Homologous_superfamily	IPR016024	Armadillo-type fold
Repeat	IPR000225	Armadillo

Domain Details Per Protein

Protein	Additional Resources	Length
UniProtKB:A0A8M3ASI4	InterPro	1009
UniProtKB:A0A8M3ASI2	InterPro	1048
UniProtKB:A0A8M9PXY3	InterPro	966
UniProtKB:A0A8M9QE79	InterPro	998
UniProtKB:A2BGY1	InterPro	986
UniProtKB:A0A8M3AZP7	InterPro	984
UniProtKB:A0A8M9PKF3	InterPro	1041
UniProtKB:A0A8M3B9P1	InterPro	1016
UniProtKB:A0A8M3ASE0	InterPro	1030
UniProtKB:A0A8M3AZP1	InterPro	1032
UniProtKB:A0A8M3B2J5	InterPro	1038
UniProtKB:A0A8M3B2J8	InterPro	1008
UniProtKB:A0A8M9Q3M5	InterPro	1002
UniProtKB:A0A8M9PXX9	InterPro	1014
UniProtKB:A0A8M9Q8X2	InterPro	992
UniProtKB:A0A8M3ASE4	InterPro	938
UniProtKB:A0AB32TNC3	InterPro	986
UniProtKB:A0AB32TPG5	InterPro	904
UniProtKB:A0AB32TPN2	InterPro	920
UniProtKB:A0AB32TR23	InterPro	886
UniProtKB:A0AB32TRP5	InterPro	974
UniProtKB:A0AB32TS06	InterPro	1048
UniProtKB:A0AB32TTK9	InterPro	1020
UniProtKB:A0AB32TUK2	InterPro	1002
UniProtKB:A0AB32TVC5	InterPro	992
UniProtKB:A0AB32TVI0	InterPro	1014
UniProtKB:A0AB32TWS1	InterPro	1002

Transcripts

Genome Browsers

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	arvcfb-201 (1) Ensembl	Ensembl	2,961 nt	Select Tool ZFIN BLAST
mRNA	arvcfb-202 (1) Ensembl	Ensembl	575 nt	Select Tool ZFIN BLAST
mRNA	arvcfb-203 (1) Ensembl	Ensembl	679 nt	Select Tool ZFIN BLAST
mRNA	arvcfb-204 (1) Ensembl	Ensembl	9,165 nt	Select Tool ZFIN BLAST
mRNA	arvcfb-206 (1) Ensembl	Ensembl	774 nt	Select Tool ZFIN BLAST
mRNA	arvcfb-207 (1) Ensembl	Ensembl	763 nt	Select Tool ZFIN BLAST
mRNA	arvcfb-208 (1) Ensembl	Ensembl	2,915 nt	Select Tool ZFIN BLAST
mRNA	arvcfb-209 (1) Ensembl	Ensembl	2,808 nt	Select Tool ZFIN BLAST
ncRNA	arvcfb-003 (1) Ensembl	Ensembl	610 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations