Gene

acot13

ID
ZDB-GENE-060503-437
Name
acyl-CoA thioesterase 13
Symbol
acot13 Nomenclature History
Previous Names
  • si:dkey-218n20.4
  • them2
Type
protein_coding_gene
Location
Chr: 19 Mapping Details/Browsers
Description
Enables long-chain fatty acyl-CoA hydrolase activity. Orthologous to human ACOT13 (acyl-CoA thioesterase 13).
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
1 figure from Yu et al., 2015
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
No data available
Wild Type Expression Summary
Phenotype
All Phenotype Data
1 Figure from Yu et al., 2015
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
Allele Type Localization Consequence Mutagen Supplier
sa31035Allele with one point mutationUnknownPremature StopENU
Zebrafish International Resource Center (ZIRC) (order this)
European Zebrafish Resource Center (EZRC) (order this)
sa43305Allele with one point mutationUnknownPremature StopENU
Zebrafish International Resource Center (ZIRC) (order this)
European Zebrafish Resource Center (EZRC) (order this)
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Sequence Targeting Reagents
Targeting Reagent Created Alleles Citations
MO1-acot13N/AYu et al., 2015
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Human Disease
Associated With acot13 Human Ortholog
No data available
Associated With acot13 Via Experimental Models
No data available
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Domain IPR003736 Phenylacetic acid degradation-related domain
Domain IPR006683 Thioesterase domain
Family IPR039298 Acyl-coenzyme A thioesterase 13
Homologous_superfamily IPR029069 HotDog domain superfamily
1 - 4 of 4
Domain Details Per Protein
Protein Additional Resources Length Acyl-coenzyme A thioesterase 13 HotDog domain superfamily Phenylacetic acid degradation-related domain Thioesterase domain
UniProtKB:F6P1Y9 InterPro PDB 146
UniProtKB:Q1LWU4 InterPro 144
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Transcripts
Genome Browsers
Genome Build: GRCz11Chromosome: 19
Type Name Annotation Method Has Havana Data Length (nt) Analysis
mRNA acot13-201 (1)
Ensembl
Ensembl 505 nt
ZFIN BLAST
mRNA acot13-202 (1)
Ensembl
Ensembl 580 nt
ZFIN BLAST
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Interactions and Pathways
No data available
Antibodies
No data available
Plasmids
No data available
Constructs
No data available
Marker Relationships
Relationship Marker Type Marker Accession Numbers Citations
Contained inBACDKEY-218N20ZFIN Curated Data
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Sequences
Type Accession # Sequence Length (nt/aa) Analysis
RNARefSeq:NM_001080803 (1)505 nt
ZFIN BLASTNCBI BLASTEnsemblUCSC BLAT
GenomicGenBank:BX511258 (1)200076 nt
MegaBLAST
PolypeptideUniProtKB:F6P1Y9 (1)146 aa
ZFIN BLASTSIB BLASTEnsembl Protein Blast
Orthology
Comparative Orthology
Alliance
Gene Tree
Ensembl
Species Symbol Chromosome Accession # Evidence
HumanACOT136
Amino acid sequence comparison (2)
Conserved genome location (synteny) (1)
MouseAcot1313
Conserved genome location (synteny) (1)
Amino acid sequence comparison (2)
Citations
TSV
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