Gene

clcn1a

ID
ZDB-GENE-060503-333
Name
chloride channel, voltage-sensitive 1a
Symbol
clcn1a Nomenclature History
Previous Names
  • si:dkey-14o18.5 (1)
Type
protein_coding_gene
Location
Chr: 19 Mapping Details/Browsers
Description
Predicted to have voltage-gated chloride channel activity. Predicted to be involved in chloride transport. Predicted to localize to integral component of plasma membrane. Is expressed in gill. Human ortholog(s) of this gene implicated in myotonia congenita. Orthologous to human CLCN1 (chloride voltage-gated channel 1).
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
1 figure from Wang et al., 2015
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
No data available
Wild Type Expression Summary
Phenotype
All Phenotype Data
No data available
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
Sequence Targeting Reagents
Human Disease
Associated With clcn1a Human Ortholog
Disease Ontology Term Multi-Species Data OMIM Term OMIM Phenotype ID
Myotonia congenita, dominant 160800
Myotonia congenita, recessive 255700
Myotonia levior 160800
Associated With clcn1a Via Experimental Models
No data available
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Family IPR001807 Chloride channel, voltage gated
Homologous_superfamily IPR014743 Chloride channel, core
Homologous_superfamily IPR046342 CBS domain superfamily
Domain Details Per Protein
Protein Length CBS domain superfamily Chloride channel, core Chloride channel, voltage gated
UniProtKB:A0A8M6YTZ2 968
UniProtKB:A0A0R4ID92 945
UniProtKB:A0A8M6Z2F5 628
UniProtKB:F1Q5M3 1011
UniProtKB:A0A8M9PGL5 973
Transcripts
Genome Browsers
Type Name Annotation Method Length (nt) Analysis
mRNA clcn1a-201 (1) Havana 3951 nt
mRNA clcn1a-202 (1) Ensembl 2923 nt
Interactions and Pathways
No data available
Antibodies
No data available
Plasmids
No data available
Constructs
Marker Relationships
Sequences
Orthology
Comparative Orthology
Alliance
Gene Tree
Ensembl
Citations