ZFIN ID: ZDB-GENE-060312-37
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Gene Name: tripartite motif containing 55b
Gene Symbol: trim55b
Sequence Ontology ID : SO:0000704

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Previous Names: im:7145460, MuRF2B (1), zgc:136833

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(Including Attributions)
Location: Chr: 24 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have zinc ion binding activity; predicted to localize to the intracellular; orthologous to human TRIM55 (tripartite motif containing 55).
GENE EXPRESSION
All Expression Data: 6 figures from 2 publications
Directly Submitted Expression Data: 5 figures (7 images) from Thisse et al., 2004 [IMAGE:7145460]
Wild-type Stages, Structures: Segmentation:14-19 somites (16.0h-19.0h) to Adult (90d-730d, breeding adult)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTSNo data available
PHENOTYPE No data available
DISEASE ASSOCIATED WITH trim55b HUMAN ORTHOLOG No data available
DISEASE ASSOCIATED WITH trim55b VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Molecular Function metal ion binding (more)
GO Terms (all 2)
PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR000315 (1)
  • InterPro:IPR001841 (1)
  • InterPro:IPR013083 (1)
  • InterPro:IPR017903 (1)
  • InterPro:IPR017907 (1)
  • InterPro:IPR027370 (1)
    		•
  • PROSITE:PS00518 (1)
  • PROSITE:PS50089 (1)
  • PROSITE:PS50119 (1)
  • PROSITE:PS51262 (1)
    		•
  • Pfam:PF00643 (1)
  • Pfam:PF13445 (1)
    		•
    TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA trim55b-201 (1) 1674
    Select Tool
    GENE PRODUCT DESCRIPTION No description available
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM trim55b No data available
    MARKER RELATIONSHIPS
    trim55bContained in: [BAC] CH211-125L9 (1) (order this)
    trim55bEncodes: [EST] IMAGE:7145460 (1) (order this)
    [cDNA] MGC:136833 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001039982 (1) 1698bp
    Select Tool
    Genomic GenBank:CR354424 (1) 156999bp
    Select Tool
    Polypeptide UniProtKB:Q29RB6 (1) 366aa
    Select Tool
    Sequence Clusters UniGene:40198 (1)
    Sequence Information (all 14)
    OTHER trim55b GENE PAGES
  • Alliance (1)
  • Gene:664753 (1)
  • VEGA:OTTDARG00000022514 (1)
  • Ensembl(GRCz11):ENSDARG00000058158 (1)
    • ORTHOLOGY for trim55b (Chr: 24)
    CITATIONS (18)