Gene

arid4a

ID

ZDB-GENE-050809-105

Name

AT-rich interactive domain 4A

Symbol

arid4a Nomenclature History

Previous Names

fc43f03
fi11g07
fi14h03
wu:fc43f03
wu:fi06c05
wu:fi11g07
wu:fi14h03
zgc:110391 (1)

Type

protein_coding_gene

Location

Chr: 17 Mapping Details/Browsers

Description

Predicted to have transcription regulatory region DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to localize to nucleus. Orthologous to human ARID4A (AT-rich interaction domain 4A).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

1 figure from Thisse et al., 2004

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

IMAGE:7159240 (1 image)

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With arid4a Human Ortholog

No data available

Associated With arid4a Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR001606	ARID DNA-binding domain
Domain	IPR002999	Tudor domain
Domain	IPR012603	ARID4A/B, PWWP domain
Domain	IPR025995	RNA binding activity-knot of a chromodomain
Domain	IPR047472	ARID4A, first Tudor domain
Domain	IPR047473	ARID4A, chromo barrel domain
Family	IPR051232	AT-rich Interactive Domain/SWI1 Chromatin Remodeling
Homologous_superfamily	IPR016197	Chromo-like domain superfamily
Homologous_superfamily	IPR036431	ARID DNA-binding domain superfamily

Domain Details Per Protein

Protein	Length	ARID4A/B, PWWP domain	ARID4A, chromo barrel domain	ARID4A, first Tudor domain	ARID DNA-binding domain	ARID DNA-binding domain superfamily	AT-rich Interactive Domain/SWI1 Chromatin Remodeling	Chromo-like domain superfamily	RNA binding activity-knot of a chromodomain	Tudor domain
UniProtKB:Q499A1 InterPro	1196
UniProtKB:A0A8M2B539 InterPro	1332

Transcripts

Genome Browsers

Type	Name	Annotation Method	Length (nt)	Analysis
lincRNA	ottdart00000059129 (1) Ensembl	Ensembl	540 nt	Select Tool ZFIN BLAST
mRNA	arid4a-201 (1) Ensembl	Ensembl	3,687 nt	Select Tool ZFIN BLAST
mRNA	arid4a-202 (1) Ensembl	Ensembl	2,172 nt	Select Tool ZFIN BLAST
mRNA	arid4a-203 (1) Ensembl	Ensembl	4,068 nt	Select Tool ZFIN BLAST
mRNA	arid4a-204 (1) Ensembl	Ensembl	5,727 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations