Gene

edc3

ID
ZDB-GENE-050522-287
Name
enhancer of mRNA decapping 3 homolog (S. cerevisiae)
Symbol
edc3 Nomenclature History
Previous Names
  • im:7151288
  • lsm16 (1)
  • wu:fb82d07
  • yjdc (1)
  • zgc:112006 (1)
Type
protein_coding_gene
Location
Chr: 25 Mapping Details/Browsers
Description
Predicted to have mRNA binding activity and phosphodiesterase decapping endonuclease activity. Predicted to be involved in cytoplasmic mRNA processing body assembly and deadenylation-independent decapping of nuclear-transcribed mRNA. Predicted to localize to P-body. Human ortholog(s) of this gene implicated in autosomal recessive non-syndromic intellectual disability. Orthologous to human EDC3 (enhancer of mRNA decapping 3).
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
1 figure from Thisse et al., 2004
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
Wild Type Expression Summary
Phenotype
All Phenotype Data
No data available
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
Sequence Targeting Reagents
Human Disease
Associated With edc3 Human Ortholog
Disease Ontology Term Multi-Species Data OMIM Term OMIM Phenotype ID
autosomal recessive intellectual developmental disorder 50 Alliance ?Intellectual developmental disorder, autosomal recessive 50 616460
Associated With edc3 Via Experimental Models
No data available
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Domain IPR004443 YjeF N-terminal domain
Domain IPR019050 FDF domain
Domain IPR025609 Lsm14-like, N-terminal
Domain IPR025762 DFDF domain
Domain IPR034107 Lsm16, N-terminal
Domain IPR047575 Sm domain
Homologous_superfamily IPR036652 YjeF N-terminal domain superfamily
Domain Details Per Protein
Protein Length DFDF domain FDF domain Lsm14-like, N-terminal Lsm16, N-terminal Sm domain YjeF N-terminal domain YjeF N-terminal domain superfamily
UniProtKB:F1QL27 506
UniProtKB:Q502M5 507
UniProtKB:A0A8M2BAE2 486
UniProtKB:A0A8M2BA31 484
Transcripts
Genome Browsers
Type Name Annotation Method Has Havana Data Length (nt) Analysis
mRNA edc3-201 (1) Ensembl 4,258 nt
mRNA edc3-203 (1) Ensembl 6,620 nt
ncRNA edc3-002 (1) Ensembl 646 nt
Interactions and Pathways
No data available
Antibodies
No data available
Plasmids
No data available
Constructs
Marker Relationships
Sequences
Orthology
Comparative Orthology
Alliance
Gene Tree
Ensembl
Citations