Gene
pus7l
- ID
- ZDB-GENE-050419-188
- Name
- pseudouridine synthase 7 like
- Symbol
- pus7l Nomenclature History
- Previous Names
-
- si:dkey-234l24.3
- Type
- protein_coding_gene
- Location
- Chr: 4 Mapping Details/Browsers
- Description
- Predicted to enable pseudouridine synthase activity. Predicted to be involved in mRNA pseudouridine synthesis. Predicted to act upstream of or within RNA modification and mRNA processing. Predicted to be active in nucleus. Orthologous to human PUS7L (pseudouridine synthase 7 like).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- No data available
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
No data available
No data available
Human Disease
Domain, Family, and Site Summary
Domain Details Per Protein
| Protein | Additional Resources | Length | Pseudouridine synthase, catalytic domain superfamily | Pseudouridine synthase, TruD | Pseudouridine synthase, TruD, catalytic domain | Pseudouridine synthase, TruD, insertion domain |
|---|---|---|---|---|---|---|
| UniProtKB:Q1L8I0 | InterPro | 643 | ||||
| UniProtKB:A0AB32TSE6 | InterPro | 657 |
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| antisense |
ottdart00000041933
(1)
|
Ensembl | 752 nt | ||
| antisense |
ottdart00000041934
(1)
|
Ensembl | 730 nt | ||
| mRNA |
pus7l-201
(1)
|
Ensembl | 585 nt | ||
| mRNA |
pus7l-203
(1)
|
Ensembl | 623 nt | ||
| mRNA |
pus7l-205
(1)
|
Ensembl | 2,241 nt | ||
| mRNA |
pus7l-206
(1)
|
Ensembl | 1,627 nt | ||
| ncRNA |
pus7l-005
(1)
|
Ensembl | 505 nt | ||
| ncRNA |
pus7l-007
(1)
|
Ensembl | 668 nt |
Interactions and Pathways
No data available
Plasmids
No data available
No data available
| Relationship | Marker Type | Marker | Accession Numbers | Citations |
|---|---|---|---|---|
| Contained in | BAC | CH73-381A20 | ZFIN Curated Data | |
| Contained in | BAC | DKEY-234L24 | ZFIN Curated Data | |
| Encodes | cDNA | MGC:162000 | ZFIN Curated Data |
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| Type | Accession # | Sequence | Length (nt/aa) | Analysis |
|---|---|---|---|---|
| RNA | RefSeq:NM_001044957 (1) | 2241 nt | ||
| Genomic | GenBank:CR786571 (1) | 182259 nt | ||
| Polypeptide | UniProtKB:A0AB32TSE6 (1) | 657 aa |
- Yu, F., Luo, H.R., Cui, X.F., Wu, Y.J., Li, J.L., Feng, W.R., Tang, Y.K., Su, S.Y., Xiao, J., Hou, Z.S., Xu, P. (2022) Changes in aggression and locomotor behaviors in response to zinc is accompanied by brain cell heterogeneity and metabolic and circadian dysregulation of the brain-liver axis. Ecotoxicology and environmental safety. 248:114303
- Elkon, R., Milon, B., Morrison, L., Shah, M., Vijayakumar, S., Racherla, M., Leitch, C.C., Silipino, L., Hadi, S., Weiss-Gayet, M., Barras, E., Schmid, C.D., Ait-Lounis, A., Barnes, A., Song, Y., Eisenman, D.J., Eliyahu, E., Frolenkov, G.I., Strome, S.E., Durand, B., Zaghloul, N.A., Jones, S.M., Reith, W., Hertzano, R. (2015) RFX transcription factors are essential for hearing in mice. Nature communications. 6:8549
- Li, I.C., Chan, C.T., Lu, Y.F., Wu, Y.T., Chen, Y.C., Li, G.B., Lin, C.Y., and Hwang, S.P. (2011) Zebrafish krüppel-like factor 4a represses intestinal cell proliferation and promotes differentiation of intestinal cell lineages. PLoS One. 6(6):e20974
- Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J., and Marra,M.A. (2002) Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Proceedings of the National Academy of Sciences of the United States of America. 99(26):16899-903
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