Gene
cirbpa
- ID
- ZDB-GENE-050417-329
- Name
- cold inducible RNA binding protein a
- Symbol
- cirbpa Nomenclature History
- Previous Names
-
- wu:fb12a12
- wu:fb16h02
- wu:fb55a06
- wu:fc67h01
- wu:fj10g10
- zgc:109887
- zgc:112425
- Type
- protein_coding_gene
- Location
- Chr: 2 Mapping Details/Browsers
- Description
- Predicted to have RNA binding activity. Predicted to be involved in positive regulation of mRNA splicing, via spliceosome. Predicted to localize to spliceosomal complex. Is expressed in digestive system; nervous system; and pectoral fin. Orthologous to several human genes including CIRBP (cold inducible RNA binding protein).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 14 figures from 2 publications
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Domain | IPR000504 | RNA recognition motif domain |
| Domain | IPR003954 | RNA recognition motif domain, eukaryote |
| Family | IPR050441 | RNA-binding motif |
| Homologous_superfamily | IPR012677 | Nucleotide-binding alpha-beta plait domain superfamily |
| Homologous_superfamily | IPR035979 | RNA-binding domain superfamily |
Domain Details Per Protein
| Protein | Length | Nucleotide-binding alpha-beta plait domain superfamily | RNA-binding domain superfamily | RNA-binding motif | RNA recognition motif domain | RNA recognition motif domain, eukaryote |
|---|---|---|---|---|---|---|
|
UniProtKB:A0A8M6Z3G7
|
156 | |||||
|
UniProtKB:Q566W6
|
185 |
- Genome Browsers
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
cirbpa-201
(1)
|
Ensembl | 1,305 nt |
Interactions and Pathways
No data available
Plasmids
No data available