Gene

rbm39b

ID

ZDB-GENE-050327-97

Name

RNA binding motif protein 39b

Symbol

rbm39b Nomenclature History

Previous Names

rbm39l (1)
rnpc2l (1)
wu:fa97g07
wu:fb09c08
zgc:112139
zgc:113117

Type

protein_coding_gene

Location

Chr: 8 Mapping Details/Browsers

Description

Predicted to enable U1 snRNP binding activity. Predicted to act upstream of or within mRNA processing. Predicted to be located in nucleus. Orthologous to human RBM39 (RNA binding motif protein 39).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

No data available

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With rbm39b Human Ortholog

No data available

Associated With rbm39b Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR000504	RNA recognition motif domain
Domain	IPR029123	Splicing factor RBM39, linker
Family	IPR006509	Splicing factor, RBM39-like
Homologous_superfamily	IPR012677	Nucleotide-binding alpha-beta plait domain superfamily
Homologous_superfamily	IPR035979	RNA-binding domain superfamily

Domain Details Per Protein

Protein	Length	Nucleotide-binding alpha-beta plait domain superfamily	RNA-binding domain superfamily	RNA recognition motif domain	Splicing factor, RBM39-like	Splicing factor RBM39, linker
UniProtKB:Q58ER0 InterPro	539
UniProtKB:A0A8M9QDQ9 InterPro	312
UniProtKB:A0A8M2BF87 InterPro	440

Transcripts

Genome Browsers

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	rbm39b-201 (1) Ensembl	Ensembl	2,628 nt	Select Tool ZFIN BLAST
mRNA	rbm39b-202 (1) Ensembl	Ensembl	941 nt	Select Tool ZFIN BLAST
mRNA	rbm39b-205 (1) Ensembl	Ensembl	962 nt	Select Tool ZFIN BLAST
mRNA	rbm39b-207 (1) Ensembl	Ensembl	5,888 nt	Select Tool ZFIN BLAST
mRNA	rbm39b-208 (1) Ensembl	Ensembl	6,216 nt	Select Tool ZFIN BLAST
ncRNA	rbm39b-004 (1) Ensembl	Ensembl	928 nt	Select Tool ZFIN BLAST
ncRNA	rbm39b-005 (1) Ensembl	Ensembl	839 nt	Select Tool ZFIN BLAST
ncRNA	rbm39b-006 (1) Ensembl	Ensembl	772 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations