Gene

plxnb1a

ID
ZDB-GENE-050302-63
Name
plexin b1a
Symbol
plxnb1a Nomenclature History
Previous Names
  • im:7054247 (1)
  • si:ch211-220i18.5
  • wu:fb83a09
Type
protein_coding_gene
Location
Chr: 23 Mapping Details/Browsers
Description
Predicted to enable semaphorin receptor activity. Acts upstream of or within axon extension. Predicted to be located in membrane. Predicted to be part of semaphorin receptor complex. Predicted to be active in plasma membrane. Orthologous to human PLXNB1 (plexin B1).
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
1 figure from Knickmeyer et al., 2021
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
No data available
Wild Type Expression Summary
Phenotype
All Phenotype Data
1 Figure from Hilario et al., 2009
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
Allele Type Localization Consequence Mutagen Supplier
la022435TgTransgenic insertionUnknownUnknownDNA
la028479TgTransgenic insertionUnknownUnknownDNA
sa32425Allele with one point mutationUnknownPremature StopENU
sa37627Allele with one point mutationUnknownSplice SiteENU
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Sequence Targeting Reagents
Targeting Reagent Created Alleles Citations
MO1-plxnb1aN/AHilario et al., 2009
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Human Disease
Associated With plxnb1a Human Ortholog
No data available
Associated With plxnb1a Via Experimental Models
No data available
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Domain IPR001627 Sema domain
Domain IPR002909 IPT domain
Domain IPR013548 Plexin, cytoplasmic RasGAP domain
Domain IPR016201 PSI domain
Domain IPR041019 Plexin, TIG domain 1
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Domain Details Per Protein
Protein Additional Resources Length Immunoglobulin E-set Immunoglobulin-like fold IPT domain Plexin, cytoplasmic RasGAP domain Plexin, cytoplasmic RhoGTPase-binding domain Plexin family Plexin repeat Plexin, TIG domain 1 Plexin, TIG domain 2 PSI domain Rho GTPase activation protein Sema domain Sema domain superfamily WD40/YVTN repeat-like-containing domain superfamily
UniProtKB:A0A8M3B5Y3 InterPro 1930
UniProtKB:A0A8M3AMN7 InterPro 2138
UniProtKB:A0A8M1QKJ0 InterPro 2133
UniProtKB:A0AB32TG15 InterPro 1932
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Transcripts
Genome Browsers
Genome Build: GRCz11Chromosome: 23
Type Name Annotation Method Has Havana Data Length (nt) Analysis
mRNA plxnb1a-201 (1) Ensembl 779 nt
mRNA plxnb1a-202 (1) Ensembl 914 nt
mRNA plxnb1a-203 (1) Ensembl 3,945 nt
mRNA plxnb1a-204 (1) Ensembl 508 nt
mRNA plxnb1a-205 (1) Ensembl 5,838 nt
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Interactions and Pathways
No data available
Antibodies
No data available
Plasmids
No data available
Constructs
No data available
Marker Relationships
Relationship Marker Type Marker Accession Numbers Citations
Contained inBACCH211-188C24ZFIN Curated Data
Contained inBACCH211-220I18ZFIN Curated Data
Contained inBACDKEY-202E11ZFIN Curated Data
ContainsSNPrs3729236
    ZFIN Curated Data
    ContainsSNPrs3729237
      ZFIN Curated Data
      EncodesESTfb83a09
      EncodesESTIMAGE:7054247
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      Sequences
      Orthology
      Comparative Orthology
      Alliance
      Gene Tree
      Ensembl
      Species Symbol Chromosome Accession # Evidence
      HumanPLXNB13
      Amino acid sequence comparison (2)
      MousePlxnb19
      Amino acid sequence comparison (1)
      Citations
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