ZFIN is now using GRCz12tu for Genomic Data
Gene
rbm20
- ID
- ZDB-GENE-050208-256
- Name
- RNA binding motif protein 20
- Symbol
- rbm20 Nomenclature History
- Previous Names
-
- fc55f12
- im:7146943
- si:ch211-223c9.2
- wu:fc55f12
- Type
- protein_coding_gene
- Location
- Chr: 22 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- Predicted to enable RNA binding activity and zinc ion binding activity. Predicted to be located in nucleus. Is expressed in heart. Human ortholog(s) of this gene implicated in dilated cardiomyopathy and dilated cardiomyopathy 1DD. Orthologous to human RBM20 (RNA binding motif protein 20).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 3 figures from 3 publications
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
-
- IMAGE:7146943 (1 image)
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
| Disease Ontology Term | Multi-Species Data | OMIM Term | OMIM Phenotype ID |
|---|---|---|---|
| dilated cardiomyopathy 1DD | Alliance | Cardiomyopathy, dilated, 1DD | 613172 |
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Domain | IPR000504 | RNA recognition motif domain |
| Domain | IPR000690 | Matrin/U1-C, C2H2-type zinc finger |
| Domain | IPR003604 | Matrin/U1-C-like, C2H2-type zinc finger |
| Domain | IPR034790 | RBM20, RNA recognition motif |
| Homologous_superfamily | IPR012677 | Nucleotide-binding alpha-beta plait domain superfamily |
| Homologous_superfamily | IPR035979 | RNA-binding domain superfamily |
| Homologous_superfamily | IPR036236 | Zinc finger C2H2 superfamily |
Domain Details Per Protein
| Protein | Additional Resources | Length | Matrin/U1-C, C2H2-type zinc finger | Matrin/U1-C-like, C2H2-type zinc finger | Nucleotide-binding alpha-beta plait domain superfamily | RBM20, RNA recognition motif | RNA-binding domain superfamily | RNA recognition motif domain | Zinc finger C2H2 superfamily |
|---|---|---|---|---|---|---|---|---|---|
| UniProtKB:A0AC58IH96 | InterPro | 1067 | |||||||
| UniProtKB:A0AC58IH99 | InterPro | 969 | |||||||
| UniProtKB:A0AC58IHA0 | InterPro | 1042 |
- Genome Browsers
- No data available
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| ncRNA |
si:ch211-223c9.2-001
(1)
|
Ensembl | 662 nt |
Interactions and Pathways
No data available
Plasmids
No data available
- Genome Browsers