Gene

oclnb

ID
ZDB-GENE-041212-43
Name
occludin b
Symbol
oclnb Nomenclature History
Previous Names
  • wu:fk83f10
  • zgc:101820
Type
protein_coding_gene
Location
Chr: 5 Mapping Details/Browsers
Description
Predicted to localize to integral component of membrane. Human ortholog(s) of this gene implicated in Crohn's disease and pseudo-TORCH syndrome 1. Is expressed in several structures, including EVL; digestive system; extension; pleuroperitoneal region; and sensory system. Orthologous to human OCLN (occludin).
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
17 figures from 7 publications
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
Wild Type Expression Summary
Phenotype
All Phenotype Data
No data available
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
Allele Type Localization Consequence Mutagen Supplier
sa20421Allele with one point mutationUnknownPremature StopENU
sa20422Allele with one point mutationUnknownPremature StopENU
1 - 2 of 2
Show
Sequence Targeting Reagents
No data available
Human Disease
Associated With oclnb Human Ortholog
Disease Ontology Term Multi-Species Data OMIM Term OMIM Phenotype ID
pseudo-TORCH syndrome 1 Alliance Pseudo-TORCH syndrome 1 251290
1 - 1 of 1
Associated With oclnb Via Experimental Models
No data available
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Domain IPR008253 Marvel domain
Domain IPR010844 Occludin homology domain
Family IPR031176 ELL/occludin family
1 - 3 of 3
Domain Details Per Protein
Protein Length ELL/occludin family Marvel domain Occludin homology domain
UniProtKB:Q5PRA1 461
UniProtKB:A2BGQ3 471
1 - 2 of 2
Transcripts
Genome Browsers
Genome Build: GRCz11Chromosome: 5
Type Name Annotation Method Has Havana Data Length (nt) Analysis
mRNA oclnb-201 (1) Ensembl 1,386 nt
mRNA oclnb-202 (1) Ensembl 2,389 nt
mRNA oclnb-204 (1) Ensembl 1,462 nt
ncRNA oclnb-002 (1) Ensembl 945 nt
1 - 4 of 4
Interactions and Pathways
No data available
Antibodies
No data available
Plasmids
No data available
Constructs
No data available
Marker Relationships
Relationship Marker Type Marker Accession Numbers Citations
Contained inBACCH211-214J8ZFIN Curated Data
EncodesESTfk83f10ZFIN Curated Data
EncodescDNAMGC:101820ZFIN Curated Data
EncodescDNAMGC:191857ZFIN Curated Data
1 - 4 of 4
Show
Sequences
Orthology
Comparative Orthology
Alliance
Gene Tree
Ensembl
Species Symbol Chromosome Accession # Evidence
HumanOCLN5
Amino acid sequence comparison (1)
Conserved genome location (synteny) (1)
Citations
1 - 10 of 20
Show