ZFIN is now using GRCz12tu for Genomic Data
Gene
ftr78
- ID
- ZDB-GENE-041001-120
- Name
- finTRIM family, member 78
- Symbol
- ftr78 Nomenclature History
- Previous Names
- Type
- protein_coding_gene
- Location
- Chr: 20 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- Predicted to enable zinc ion binding activity. Predicted to be involved in protein ubiquitination.
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- No data available
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Conserved_site | IPR017907 | Zinc finger, RING-type, conserved site |
| Domain | IPR000315 | B-box-type zinc finger |
| Domain | IPR001841 | Zinc finger, RING-type |
| Domain | IPR040847 | Mind bomb, SH3 repeat domain |
| Family | IPR051051 | E3 ubiquitin-protein ligase TRIM/RNF |
| Homologous_superfamily | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
Domain Details Per Protein
| Protein | Additional Resources | Length | B-box-type zinc finger | E3 ubiquitin-protein ligase TRIM/RNF | Mind bomb, SH3 repeat domain | Zinc finger, RING/FYVE/PHD-type | Zinc finger, RING-type | Zinc finger, RING-type, conserved site |
|---|---|---|---|---|---|---|---|---|
| UniProtKB:Q5RIK1 | InterPro | 794 |
- Genome Browsers
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
ftr97-202
(1)
|
Ensembl | 3,313 nt | ||
| ncRNA |
ottdart00000026399
(1)
|
Ensembl | 546 nt |
Interactions and Pathways
No data available
Plasmids
No data available
- Genome Browsers