Gene

lsm1

ID

ZDB-GENE-040801-68

Name

LSM1, U6 small nuclear RNA associated

Symbol

lsm1 Nomenclature History

Previous Names

zgc:101136 (1)

Type

protein_coding_gene

Location

Chr: 8 Mapping Details/Browsers

Description

Predicted to enable RNA cap binding activity. Predicted to be involved in deadenylation-dependent decapping of nuclear-transcribed mRNA. Predicted to act upstream of or within nuclear-transcribed mRNA catabolic process. Predicted to be located in cytoplasm. Predicted to be part of Lsm1-7-Pat1 complex. Predicted to be active in P-body. Orthologous to human LSM1 (LSM1 homolog, mRNA degradation associated).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

1 figure from Thisse et al., 2004

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

MGC:101136 (1 image)

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With lsm1 Human Ortholog

No data available

Associated With lsm1 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR001163	Sm domain, eukaryotic/archaea-type
Domain	IPR034104	Sm-like protein Lsm1
Domain	IPR047575	Sm domain
Family	IPR044642	U6 snRNA-associated Sm-like protein Lsm1/8
Homologous_superfamily	IPR010920	LSM domain superfamily