ZFIN ID: ZDB-GENE-040801-259
Gene Name: penta-EF-hand domain containing 1
Gene Symbol: pef1
Sequence Ontology ID : SO:0000704

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Previous Name: zgc:100787 (1)

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(Including Attributions)
Location: Chr: 19 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have molecular adaptor activity; predicted to be involved in several processes, including COPII vesicle coating, mesenchymal cell differentiation, and positive regulation of protein  ...
GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [IMAGE:6893932]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa36885 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH pef1 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH pef1 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process COPII vesicle coating (more)
    Cellular Component COPII vesicle coat (more)
    Molecular Function molecular adaptor activity (more)
    GO Terms (all 14)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR002048 (1)
  • InterPro:IPR011992 (1)
  • InterPro:IPR018247 (1)
  • PROSITE:PS00018 (1)
  • PROSITE:PS50222 (1)
  • Pfam:PF13405 (1)
  • Pfam:PF13833 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA pef1-001 (1) 1450
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM pef1 No data available
    MARKER RELATIONSHIPS
    pef1Contained in: [BAC] CH211-51F17 (1) (order this)
    pef1Encodes: [EST] IMAGE:6893932 (1) (order this)
    [cDNA] MGC:100787 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001003643 (1) 1415bp
    Genomic GenBank:CR318592 (1) 124310bp
    Select Tool
    Polypeptide UniProtKB:Q6DC93 (1) 270aa
    Sequence Clusters UniGene:78732 (1)
    Sequence Information (all 11)
    OTHER pef1 GENE PAGES
  • Alliance (1)
  • Gene:445249 (1)
  • VEGA:OTTDARG00000015626 (1)
  • Ensembl(GRCz11):ENSDARG00000023989 (2)
  • ORTHOLOGY for pef1 (Chr: 19)
    CITATIONS (24)