Gene

pef1

ID
ZDB-GENE-040801-259
Name
penta-EF-hand domain containing 1
Symbol
pef1 Nomenclature History
Previous Names
  • zgc:100787 (1)
Type
protein_coding_gene
Location
Chr: 19 Mapping Details/Browsers
Description
Predicted to enable ubiquitin-like ligase-substrate adaptor activity. Predicted to be involved in COPII vesicle coating; mesenchymal cell differentiation; and positive regulation of protein monoubiquitination. Predicted to be located in cytoplasmic vesicle; endoplasmic reticulum; and membrane. Predicted to be part of COPII vesicle coat and Cul3-RING ubiquitin ligase complex. Orthologous to human PEF1 (penta-EF-hand domain containing 1).
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
1 figure from Thisse et al., 2004
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
Wild Type Expression Summary
Phenotype
All Phenotype Data
No data available
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
Allele Type Localization Consequence Mutagen Supplier
sa36885Allele with one point mutationUnknownSplice SiteENU
1 - 1 of 1
Show
Sequence Targeting Reagents
No data available
Human Disease
Associated With pef1 Human Ortholog
No data available
Associated With pef1 Via Experimental Models
No data available
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Binding_site IPR018247 EF-Hand 1, calcium-binding site
Domain IPR002048 EF-hand domain
Family IPR051426 Peflin/Sorcin Calcium-Binding
Homologous_superfamily IPR011992 EF-hand domain pair
1 - 4 of 4
Domain Details Per Protein
Protein Additional Resources Length EF-Hand 1, calcium-binding site EF-hand domain EF-hand domain pair Peflin/Sorcin Calcium-Binding
UniProtKB:Q6DC93 InterPro 270
1 - 1 of 1
Transcripts
Genome Browsers
Genome Build: GRCz11Chromosome: 19
Type Name Annotation Method Has Havana Data Length (nt) Analysis
mRNA pef1-201 (1) Ensembl 1,450 nt
1 - 1 of 1
Interactions and Pathways
No data available
Antibodies
No data available
Plasmids
No data available
Constructs
No data available
Marker Relationships
Relationship Marker Type Marker Accession Numbers Citations
Contained inBACCH211-51F17ZFIN Curated Data
EncodesESTIMAGE:6893932Thisse et al., 2004
EncodescDNAMGC:100787ZFIN Curated Data
1 - 3 of 3
Show
Sequences
Orthology
Comparative Orthology
Alliance
Gene Tree
Ensembl
Species Symbol Chromosome Accession # Evidence
HumanPEF11
Amino acid sequence comparison (1)
MousePef14
Amino acid sequence comparison (1)
Citations
1 - 3 of 3
Show