Gene
slc38a5b
- ID
- ZDB-GENE-040718-395
- Name
- solute carrier family 38 member 5b
- Symbol
- slc38a5b Nomenclature History
- Previous Names
-
- slc38a3
- wu:fc31c02
- wu:fc48a10
- zgc:92015
- Type
- protein_coding_gene
- Location
- Chr: 8 Mapping Details/Browsers
- Description
- Predicted to have amino acid transmembrane transporter activity. Predicted to be involved in amino acid transmembrane transport. Predicted to localize to integral component of plasma membrane. Is expressed in several structures, including alar plate midbrain region; margin; pleuroperitoneal region; segmental plate; and tail bud. Orthologous to human SLC38A5 (solute carrier family 38 member 5).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 7 figures from Thisse et al., 2004
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
-
- IMAGE:6892546 (19 images)
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Domain | IPR013057 | Amino acid transporter, transmembrane domain |
Domain Details Per Protein
| Protein | Length | Amino acid transporter, transmembrane domain |
|---|---|---|
|
UniProtKB:Q6DG25
|
472 |
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
slc38a5b-201
(1)
|
Ensembl | 3,610 nt | ||
| mRNA |
slc38a5b-204
(1)
|
Ensembl | 1,436 nt | ||
| ncRNA |
slc38a5b-002
(1)
|
Ensembl | 846 nt | ||
| ncRNA |
slc38a5b-003
(1)
|
Ensembl | 823 nt |
Interactions and Pathways
No data available
Plasmids
No data available
- Comparative Orthology
- Alliance
- Gene Tree
- Ensembl
- Note
- Woods, et al (2005. Genome Res. 15:1307-1314) reported this gene as slc38a3 and the ortholog of human SLC38A3 based on amino acid similarity. Subsequent analysis suggests this gene is an ortholog of human SLC38A5 and mouse Slc38a5 based on amino acid similarity and conserved location.