Gene

slc38a5b

ID

ZDB-GENE-040718-395

Name

solute carrier family 38 member 5b

Symbol

slc38a5b Nomenclature History

Previous Names

slc38a3
wu:fc31c02
wu:fc48a10
zgc:92015

Type

protein_coding_gene

Location

Chr: 8 Mapping Details/Browsers

Description

Predicted to have amino acid transmembrane transporter activity. Predicted to be involved in amino acid transmembrane transport. Predicted to localize to integral component of plasma membrane. Is expressed in several structures, including alar plate midbrain region; margin; pleuroperitoneal region; segmental plate; and tail bud. Orthologous to human SLC38A5 (solute carrier family 38 member 5).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

7 figures from Thisse et al., 2004

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

IMAGE:6892546 (19 images)

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With slc38a5b Human Ortholog

No data available

Associated With slc38a5b Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR013057	Amino acid transporter, transmembrane domain

Domain Details Per Protein

Protein	Length	Amino acid transporter, transmembrane domain
UniProtKB:Q6DG25 InterPro	472

Transcripts

Genome Browsers

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	slc38a5b-201 (1) Ensembl	Ensembl	3,610 nt	Select Tool ZFIN BLAST
mRNA	slc38a5b-204 (1) Ensembl	Ensembl	1,436 nt	Select Tool ZFIN BLAST
ncRNA	slc38a5b-002 (1) Ensembl	Ensembl	846 nt	Select Tool ZFIN BLAST
ncRNA	slc38a5b-003 (1) Ensembl	Ensembl	823 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl
Note: Woods, et al (2005. Genome Res. 15:1307-1314) reported this gene as slc38a3 and the ortholog of human SLC38A3 based on amino acid similarity. Subsequent analysis suggests this gene is an ortholog of human SLC38A5 and mouse Slc38a5 based on amino acid similarity and conserved location.

Citations