Gene

srsf5b

ID
ZDB-GENE-040718-354
Name
serine and arginine rich splicing factor 5b
Symbol
srsf5b Nomenclature History
Previous Names
  • sfrs5b
  • wu:fe15e05 (1)
  • zgc:113907
  • zgc:92278 (1)
Type
protein_coding_gene
Location
Chr: 20 Mapping Details/Browsers
Description
Predicted to enable RNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be active in nuclear speck. Orthologous to human SRSF5 (serine and arginine rich splicing factor 5).
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
3 figures from 2 publications
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
Wild Type Expression Summary
Phenotype
All Phenotype Data
1 Figure from Joris et al., 2017
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
Allele Type Localization Consequence Mutagen Supplier
ulg0032Allele with one deletionExon 2UnknownTALEN
ulg0033Allele with one deletionExon 2UnknownCRISPR
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Sequence Targeting Reagents
Targeting Reagent Created Alleles Citations
CRISPR1-srsf5b (2)
TALEN1-srsf5b (2)
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Human Disease
Associated With srsf5b Human Ortholog
No data available
Associated With srsf5b Via Experimental Models
No data available
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Domain IPR000504 RNA recognition motif domain
Family IPR050374 RRT5/SRSF/Splicing Factor SR
Homologous_superfamily IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
Homologous_superfamily IPR035979 RNA-binding domain superfamily
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Domain Details Per Protein
Protein Additional Resources Length Nucleotide-binding alpha-beta plait domain superfamily RNA-binding domain superfamily RNA recognition motif domain RRT5/SRSF/Splicing Factor SR
UniProtKB:Q6DHJ0 InterPro 285
UniProtKB:A0A8M3AT78 InterPro 177
UniProtKB:Q4V988 InterPro 164
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Transcripts
Genome Browsers
Genome Build: GRCz11Chromosome: 20
Type Name Annotation Method Has Havana Data Length (nt) Analysis
mRNA srsf5b-202 (1) Ensembl 1,707 nt
mRNA srsf5b-203 (1) Ensembl 835 nt
mRNA srsf5b-204 (1) Ensembl 2,640 nt
mRNA srsf5b-205 (1) Ensembl 715 nt
ncRNA srsf5b-005 (1) Ensembl 559 nt
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Interactions and Pathways
No data available
Antibodies
No data available
Plasmids
No data available
Constructs
No data available
Marker Relationships
Relationship Marker Type Marker Accession Numbers Citations
Contained inBACDKEY-11E23ZFIN Curated Data
EncodesESTfe15e05
EncodesESTfk88c07ZFIN Curated Data
EncodescDNAMGC:92278ZFIN Curated Data
EncodescDNAMGC:113907ZFIN Curated Data
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Sequences
Orthology
Comparative Orthology
Alliance
Gene Tree
Ensembl
Species Symbol Chromosome Accession # Evidence
HumanSRSF514
Phylogenetic tree (1)
Amino acid sequence comparison (1)
Conserved genome location (synteny) (1)
MouseSrsf512
Amino acid sequence comparison (1)
Conserved genome location (synteny) (1)
Phylogenetic tree (1)
Citations
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