ZFIN is now using GRCz12tu for Genomic Data

Gene

celf4

ID

ZDB-GENE-040718-300

Name

CUGBP, Elav-like family member 4

Symbol

celf4 Nomenclature History

Previous Names

zgc:92761

Type

protein_coding_gene

Location

Chr: 21 Mapping Details/Browsers

Genome Assembly

GRCz12tu

Annotation Status

Current

Description

Predicted to enable mRNA binding activity. Predicted to be involved in mRNA splice site recognition; positive regulation of mRNA splicing, via spliceosome; and regulation of alternative mRNA splicing, via spliceosome. Predicted to be part of ribonucleoprotein complex. Predicted to be active in cytoplasm and nucleus. Orthologous to human CELF4 (CUGBP Elav-like family member 4).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

No data available

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With celf4 Human Ortholog

No data available

Associated With celf4 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR000504	RNA recognition motif domain
Domain	IPR034648	CELF-3/4/5/6, RNA recognition motif 1
Homologous_superfamily	IPR012677	Nucleotide-binding alpha-beta plait domain superfamily
Homologous_superfamily	IPR035979	RNA-binding domain superfamily

Domain Details Per Protein

Protein	Additional Resources	Length
UniProtKB:Q6DGV1	InterPro	520
UniProtKB:A0A8M3ALA7	InterPro	540
UniProtKB:A0A8M9PQD3	InterPro	483
UniProtKB:A0A8M3B4J4	InterPro	521
UniProtKB:A0A8M9PTS7	InterPro	484
UniProtKB:A0A8M3ATP3	InterPro	540
UniProtKB:A0A8M6Z3M4	InterPro	521
UniProtKB:A0A8M9PCL3	InterPro	483
UniProtKB:A0A8M9P396	InterPro	464
UniProtKB:A0A8M3AWN6	InterPro	541
UniProtKB:A0AB32T7S0	InterPro	463
UniProtKB:A0AB32TEM3	InterPro	425
UniProtKB:A0AC58I8G9	InterPro	500
UniProtKB:A0AC58I8H4	InterPro	499
UniProtKB:A0AC58I8H6	InterPro	424
UniProtKB:A0AC58I8H9	InterPro	425
UniProtKB:A0AC58I8I0	InterPro	463
UniProtKB:A0AC58I8I2	InterPro	385
UniProtKB:A0AC58I8I3	InterPro	520
UniProtKB:A0AC58I8I4	InterPro	520
UniProtKB:A0AC58I8I5	InterPro	501
UniProtKB:A0AC58I8I6	InterPro	519
UniProtKB:A0AC58I8I7	InterPro	519
UniProtKB:A0AC58I8I8	InterPro	368
UniProtKB:A0AC58I8J0	InterPro	500
UniProtKB:A0AC58I8J2	InterPro	539
UniProtKB:A0AC58I8J3	InterPro	367
UniProtKB:A0AC58I8J4	InterPro	368
UniProtKB:A0AC58I8J5	InterPro	367
UniProtKB:A0AC58I8J6	InterPro	520
UniProtKB:A0AC58I8J8	InterPro	403
UniProtKB:A0AC58I8J9	InterPro	404
UniProtKB:A0AC58I8K0	InterPro	404
UniProtKB:A0AC58I8K1	InterPro	404
UniProtKB:A0AC58I8K2	InterPro	482
UniProtKB:A0AC58I8K3	InterPro	384
UniProtKB:A0AC58I8K5	InterPro	404
UniProtKB:A0AC58I8K7	InterPro	404
UniProtKB:A0AC58I8K8	InterPro	462
UniProtKB:A0AC58I8L0	InterPro	405
UniProtKB:A0AC58I8L4	InterPro	347
UniProtKB:A0AC58I8L5	InterPro	347
UniProtKB:A0AC58I8L6	InterPro	346
UniProtKB:A0AC58I8L9	InterPro	368
UniProtKB:A0AC58I8M4	InterPro	367
UniProtKB:A0AC58I8M5	InterPro	366

Transcripts

Genome Browsers

ZFIN

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	celf4-201 (1) Ensembl	Ensembl	2,229 nt	Select Tool ZFIN BLAST
mRNA	celf4-202 (1) Ensembl	Ensembl	1,599 nt	Select Tool ZFIN BLAST
mRNA	celf4-203 (1) Ensembl	Ensembl	566 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Genome Browsers

NCBI Map Viewer

ZFIN

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations