Gene

sf3b6

ID
ZDB-GENE-040625-36
Name
splicing factor 3b, subunit 6
Symbol
sf3b6 Nomenclature History
Previous Names
  • sf3b14
  • zgc:86708
Type
protein_coding_gene
Location
Chr: 20 Mapping Details/Browsers
Description
Predicted to have RNA binding activity. Orthologous to human SF3B6 (splicing factor 3b subunit 6).
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
1 figure from Thisse et al., 2004
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
Wild Type Expression Summary
Phenotype
All Phenotype Data
No data available
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
Sequence Targeting Reagents
Human Disease
Associated With sf3b6 Human Ortholog
No data available
Associated With sf3b6 Via Experimental Models
No data available
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Domain IPR000504 RNA recognition motif domain
Domain IPR034150 SF3B6, RNA recognition motif
Family IPR050374 RRT5/SRSF/Splicing Factor SR
Homologous_superfamily IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
Homologous_superfamily IPR035979 RNA-binding domain superfamily
Domain Details Per Protein
Protein Length Nucleotide-binding alpha-beta plait domain superfamily RNA-binding domain superfamily RNA recognition motif domain RRT5/SRSF/Splicing Factor SR SF3B6, RNA recognition motif
UniProtKB:Q6IQM0 125
Transcripts
Genome Browsers
Type Name Annotation Method Has Havana Data Length (nt) Analysis
mRNA sf3b6-201 (1) Ensembl 768 nt
ncRNA sf3b6-002 (1) Ensembl 855 nt
Interactions and Pathways
No data available
Antibodies
No data available
Plasmids
No data available
Constructs
Marker Relationships
Sequences
Orthology
Comparative Orthology
Alliance
Gene Tree
Ensembl
Citations