Gene

rcn3

ID

ZDB-GENE-040625-175

Name

reticulocalbin 3, EF-hand calcium binding domain

Symbol

rcn3 Nomenclature History

Previous Names

wu:fb37d05
zgc:86646

Type

protein_coding_gene

Location

Chr: 3 Mapping Details/Browsers

Description

Predicted to have calcium ion binding activity. Predicted to localize to endoplasmic reticulum. Is expressed in several structures, including epidermis; head mesenchyme; hypochord; mesoderm; and pectoral fin. Orthologous to human RCN3 (reticulocalbin 3).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

8 figures from 3 publications

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Thisse Expression Data

IMAGE:6893843 (24 images)

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With rcn3 Human Ortholog

No data available

Associated With rcn3 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Binding_site	IPR018247	EF-Hand 1, calcium-binding site
Domain	IPR002048	EF-hand domain
Homologous_superfamily	IPR011992	EF-hand domain pair

Domain Details Per Protein

Protein	Length	EF-Hand 1, calcium-binding site	EF-hand domain	EF-hand domain pair
UniProtKB:I3IRX8 InterPro	315
UniProtKB:Q6IQR6 InterPro	316

Transcripts

Genome Browsers

Type	Name	Annotation Method	Has Havana Data	Length (nt)	Analysis
mRNA	rcn3-201 (1) Ensembl	Ensembl		1,587 nt	Select Tool ZFIN BLAST
mRNA	rcn3-202 (1) Ensembl	Ensembl		1,454 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations