Gene
tpm2
- ID
- ZDB-GENE-040625-114
- Name
- tropomyosin 2 (beta)
- Symbol
- tpm2 Nomenclature History
- Previous Names
- Type
- protein_coding_gene
- Location
- Chr: 10 Mapping Details/Browsers
- Description
- Predicted to enable actin filament binding activity. Predicted to be involved in actin filament organization and muscle contraction. Located in striated muscle thin filament. Is expressed in adaxial cell; cardiovascular system; epiphysis; musculature system; and somite. Human ortholog(s) of this gene implicated in distal arthrogryposis type 1A and nemaline myopathy 4. Orthologous to human TPM2 (tropomyosin 2).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 13 figures from 4 publications
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
-
- cb836 (16 images)
- IMAGE:6892450 (10 images)
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Allele | Type | Localization | Consequence | Mutagen | Supplier |
---|---|---|---|---|---|
sa18509 | Allele with one point mutation | Unknown | Premature Stop | ENU |
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No data available
Human Disease
Disease Ontology Term | Multi-Species Data | OMIM Term | OMIM Phenotype ID |
---|---|---|---|
distal arthrogryposis type 1A | Alliance | Arthrogryposis, distal, type 1A | 108120 |
distal arthrogryposis type 1A | Alliance | Arthrogryposis, distal, type 2B4 | 108120 |
nemaline myopathy 4 | Alliance | Congenital myopathy 23 | 609285 |
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Domain, Family, and Site Summary
Domain Details Per Protein
Protein | Additional Resources | Length | DNA repair protein XRCC4-like, C-terminal | Tropomyosin |
---|---|---|---|---|
UniProtKB:A0A8M2B1Q6 | InterPro | 284 | ||
UniProtKB:A0A8M2B1K3 | InterPro | 284 | ||
UniProtKB:A0A8M2B255 | InterPro | 248 | ||
UniProtKB:A0A8M2B1Q8 | InterPro | 248 | ||
UniProtKB:A0A8M2B2D1 | InterPro | 248 |
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Interactions and Pathways
No data available
Plasmids
No data available
No data available
Relationship | Marker Type | Marker | Accession Numbers | Citations |
---|---|---|---|---|
Contained in | BAC | DKEY-30O2 | ZFIN Curated Data | |
Encodes | EST | cb836 | Thisse et al., 2001 | |
Encodes | EST | fj63f03 | ||
Encodes | EST | IMAGE:6892450 | Thisse et al., 2004 | |
Encodes | cDNA | MGC:86810 | ZFIN Curated Data | |
Encodes | cDNA | MGC:174394 | ZFIN Curated Data | |
Is Hybridized by | EST | fb68h02 |
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Type | Accession # | Sequence | Length (nt/aa) | Analysis |
---|---|---|---|---|
RNA | RefSeq:NM_001002119 (1) | 1337 nt | ||
Genomic | GenBank:CT573295 (2) | 141914 nt | ||
Polypeptide | UniProtKB:A0A0R4IM99 (1) | 284 aa |
- Liu, Y., Kassack, M.E., McFaul, M.E., Christensen, L.N., Siebert, S., Wyatt, S.R., Kamei, C.N., Horst, S., Arroyo, N., Drummond, I.A., Juliano, C.E., Draper, B.W. (2022) Single-cell transcriptome reveals insights into the development and function of the zebrafish ovary. eLIFE. 11:
- Han, Y., Chang, H., Wu, H. (2021) Molecular characterization of the prostaglandin E receptor subtypes 2a and 4b and their expression patterns during embryogenesis in zebrafish. The International journal of developmental biology. 65:505-511
- Ayobahan, S.U., Eilebrecht, E., Kotthoff, M., Baumann, L., Eilebrecht, S., Teigeler, M., Hollert, H., Kalkhof, S., Schäfers, C. (2019) A combined FSTRA-shotgun proteomics approach to identify molecular changes in zebrafish upon chemical exposure. Scientific Reports. 9:6599
- Kwon, O.K., Kim, S.J., Lee, S. (2018) First profiling of lysine crotonylation of myofilament proteins and ribosomal proteins in zebrafish embryos. Scientific Reports. 8:3652
- Bayés, À., Collins, M.O., Reig-Viader, R., Gou, G., Goulding, D., Izquierdo, A., Choudhary, J.S., Emes, R.D., Grant, S.G. (2017) Evolution of complexity in the zebrafish synapse proteome. Nature communications. 8:14613
- Dube, D.K., Dube, S., Abbott, L., Wang, J., Fan, Y., Alshiekh-Nasany, R., Shah, K.K., Rudloff, A.P., Poiesz, B.J., Sanger, J.M., Sanger, J.W. (2017) Identification, characterization, and expression of sarcomeric tropomyosin isoforms in zebrafish. Cytoskeleton (Hoboken, N.J.). 74(3):125-142
- Gunning, P.W., Ghoshdastider, U., Whitaker, S., Popp, D., Robinson, R.C. (2015) The evolution of compositionally and functionally distinct actin filaments. Journal of Cell Science. 128:2009-19
- Jackson, H.E., Ono, Y., Wang, X., Elworthy, S., Cunliffe, V.T., Ingham, P.W. (2015) The role of Sox6 in zebrafish muscle fiber type specification. Skeletal muscle. 5:2
- Junker, J.P., Noël, E.S., Guryev, V., Peterson, K.A., Shah, G., Huisken, J., McMahon, A.P., Berezikov, E., Bakkers, J., van Oudenaarden, A. (2014) Genome-wide RNA Tomography in the Zebrafish Embryo. Cell. 159:662-75
- Nolte, H., Konzer, A., Ruhs, A., Jungblut, B., Braun, T., Krüger, M. (2014) Global protein expression profiling of zebrafish organs based on in vivo incorporation of stable isotopes. Journal of Proteome Research. 13:2162-74
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