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General Information
ZIRC
ZFIN ID: ZDB-GENE-040426-942
Gene Name: pdgfa associated protein 1b
Gene Symbol: pdap1b
Sequence Ontology ID : SO:0000704

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Attributions

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Previous Names: pdap1, sb:eu240, zgc:56213 (1)

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(Including Attributions)
Location: Chr: 3 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Orthologous to human PDAP1 (PDGFA associated protein 1).
GENE EXPRESSION
All Expression Data: 8 figures from 3 publications
Directly Submitted Expression Data: 6 figures (10 images) from Thisse et al., 2004 [MGC:56213]
  1 figure (1 image) from Thisse et al., 2005 [eu240]
Wild-type Stages, Structures: Gastrula:50%-epiboly (5.25h-5.66h) to Hatching:Long-pec (48.0h-60.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la015211Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH pdap1b HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH pdap1b VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process biological_process (more)
    Cellular Component cellular_component (more)
    Molecular Function molecular_function (more)
    GO Terms (all 3)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR019380 (1)
  • InterPro:IPR039876 (1)
  • Pfam:PF10252 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA pdap1b-201 (1) 1421
    GENE PRODUCT DESCRIPTION No description available
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM pdap1b No data available
    MARKER RELATIONSHIPS
    pdap1bContained in: [BAC] CH211-194I10 (1) (order this), CH211-198M12 (1) (order this)
    pdap1bEncodes: [EST] eu240 (1)
    [cDNA] MGC:56213 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_200210 (1) 1283bp
    Genomic GenBank:AL928657 (1) 187734bp
    Select Tool
    Polypeptide UniProtKB:F1Q7P7 (1) 178aa
    Sequence Clusters UniGene:1791 (1)
    Sequence Information (all 13)
    ORTHOLOGY for pdap1b (Chr: 3)
    CITATIONS (22)