Gene
snu13a
- ID
- ZDB-GENE-040426-879
- Name
- SNU13 homolog, small nuclear ribonucleoprotein a (U4/U6.U5)
- Symbol
- snu13a Nomenclature History
- Previous Names
- Type
- protein_coding_gene
- Location
- Chr: 3 Mapping Details/Browsers
- Description
- Predicted to enable RNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome and maturation of SSU-rRNA. Predicted to act upstream of or within RNA splicing; mRNA processing; and ribosome biogenesis. Predicted to be located in nucleus. Predicted to be part of box C/D methylation guide snoRNP complex; nucleus; and small-subunit processome. Predicted to be active in nucleolus. Orthologous to human SNU13 (small nuclear ribonucleoprotein 13).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 1 figure from Thisse et al., 2004
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
-
- MGC:77417 (1 image)
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Conserved_site | IPR004037 | Large ribosomal subunit protein eL8-like, conserved site |
| Domain | IPR004038 | Ribosomal protein eL8/eL30/eS12/Gadd45 |
| Family | IPR002415 | H/ACA ribonucleoprotein complex, subunit Nhp2-like |
| Family | IPR018492 | Ribosomal protein eL8/Nhp2 family |
| Family | IPR050257 | Large ribosomal subunit protein eL8/uL1-like |
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Domain Details Per Protein
| Protein | Additional Resources | Length | H/ACA ribonucleoprotein complex, subunit Nhp2-like | Large ribosomal subunit protein eL8-like, conserved site | Large ribosomal subunit protein eL8/uL1-like | Ribosomal protein eL30-like superfamily | Ribosomal protein eL8/eL30/eS12/Gadd45 | Ribosomal protein eL8/Nhp2 family |
|---|---|---|---|---|---|---|---|---|
| UniProtKB:Q7ZU93 | InterPro | 128 |
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| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
snu13a-201
(1)
|
Ensembl | 1,706 nt |
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Interactions and Pathways
No data available
Plasmids
No data available
No data available
| Relationship | Marker Type | Marker | Accession Numbers | Citations |
|---|---|---|---|---|
| Contained in | BAC | CH211-256E16 | ZFIN Curated Data | |
| Encodes | cDNA | MGC:56066 | ZFIN Curated Data | |
| Encodes | cDNA | MGC:77417 |
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| Type | Accession # | Sequence | Length (nt/aa) | Analysis |
|---|---|---|---|---|
| RNA | RefSeq:NM_200312 (1) | 1837 nt | ||
| Genomic | GenBank:CT583687 (2) | 157426 nt | ||
| Polypeptide | UniProtKB:Q7ZU93 (1) | 128 aa |
| Species | Symbol | Chromosome | Accession # | Evidence |
|---|---|---|---|---|
| Human | SNU13 | 22 | Amino acid sequence comparison (1) |
- DeLaurier, A., Howe, D.G., Ruzicka, L., Carte, A.N., Mishoe Hernandez, L., Wiggins, K.J., Gallati, M.M., Vanpelt, K., Loyo Rosado, F., Pugh, K.G., Shabdue, C.J., Jihad, K., Thyme, S.B., Talbot, J.C. (2021) ZebraShare: a new venue for rapid dissemination of zebrafish mutant data. PeerJ. 9:e11007
- Shu, T., Zhai, G., Pradhan, A., Olsson, P.E., Yin, Z. (2020) Zebrafish cyp17a1 knockout reveals that androgen-mediated signaling is important for male brain sex differentiation. General and comparative endocrinology. 295:113490
- Bayés, À., Collins, M.O., Reig-Viader, R., Gou, G., Goulding, D., Izquierdo, A., Choudhary, J.S., Emes, R.D., Grant, S.G. (2017) Evolution of complexity in the zebrafish synapse proteome. Nature communications. 8:14613
- Elkon, R., Milon, B., Morrison, L., Shah, M., Vijayakumar, S., Racherla, M., Leitch, C.C., Silipino, L., Hadi, S., Weiss-Gayet, M., Barras, E., Schmid, C.D., Ait-Lounis, A., Barnes, A., Song, Y., Eisenman, D.J., Eliyahu, E., Frolenkov, G.I., Strome, S.E., Durand, B., Zaghloul, N.A., Jones, S.M., Reith, W., Hertzano, R. (2015) RFX transcription factors are essential for hearing in mice. Nature communications. 6:8549
- Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J., and Marra,M.A. (2002) Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Proceedings of the National Academy of Sciences of the United States of America. 99(26):16899-903
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