Gene
slmapb
- ID
- ZDB-GENE-040426-809
- Name
- sarcolemma associated protein b
- Symbol
- slmapb Nomenclature History
- Previous Names
-
- slmap
- zgc:55817
- Type
- protein_coding_gene
- Location
- Chr: 23 Mapping Details/Browsers
- Description
- Predicted to be involved in acrosome assembly and single fertilization. Predicted to be located in membrane. Predicted to be active in acrosomal membrane. Is expressed in epidermis; median fin fold; nervous system; neural crest; and pharyngeal arch 3-7 skeleton. Orthologous to human SLMAP (sarcolemma associated protein).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 7 figures from 3 publications
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
-
- MGC:55817 (8 images)
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
| Allele | Type | Localization | Consequence | Mutagen | Supplier |
|---|---|---|---|---|---|
| sa43948 | Allele with one point mutation | Unknown | Premature Stop | ENU |
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No data available
Human Disease
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Family | IPR051176 | Centrosomal and Immune Signaling Modulators |
Domain Details Per Protein
| Protein | Additional Resources | Length | Centrosomal and Immune Signaling Modulators |
|---|---|---|---|
| UniProtKB:Q7ZVP6 | InterPro | 376 | |
| UniProtKB:A0A8M2B8Z6 | InterPro | 377 |
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
slmapb-201
(1)
|
Ensembl | 2,071 nt | ||
| mRNA |
slmapb-203
(1)
|
Ensembl | 1,268 nt | ||
| mRNA |
slmapb-206
(1)
|
Ensembl | 1,142 nt | ||
| ncRNA |
slmapb-002
(1)
|
Ensembl | 595 nt | ||
| ncRNA |
slmapb-003
(1)
|
Ensembl | 954 nt | ||
| ncRNA |
slmapb-004
(1)
|
Ensembl | 750 nt |
Interactions and Pathways
No data available
Plasmids
No data available
| Relationship | Marker Type | Marker | Accession Numbers | Citations |
|---|---|---|---|---|
| Contained in | BAC | CH211-222G5 | ZFIN Curated Data | |
| Encodes | cDNA | MGC:55817 | ZFIN Curated Data | |
| Encodes | cDNA | MGC:192955 | ZFIN Curated Data |
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| Type | Accession # | Sequence | Length (nt/aa) | Analysis |
|---|---|---|---|---|
| RNA | RefSeq:NM_200177 (1) | 1950 nt | ||
| Genomic | GenBank:CR450723 (1) | 234987 nt | ||
| Polypeptide | UniProtKB:A0A8M2B8Z6 (1) | 377 aa |
- Bayés, À., Collins, M.O., Reig-Viader, R., Gou, G., Goulding, D., Izquierdo, A., Choudhary, J.S., Emes, R.D., Grant, S.G. (2017) Evolution of complexity in the zebrafish synapse proteome. Nature communications. 8:14613
- Ling, X.P., Lu, Y.H., and Huang, H.Q. (2012) Differential protein profile in zebrafish (Danio rerio) brain under the joint exposure of methyl parathion and cadmium. Environmental science and pollution research international. 19(9):3925-3941
- Shkumatava, A., Stark, A., Sive, H., and Bartel, D.P. (2009) Coherent but overlapping expression of microRNAs and their targets during vertebrate development. Genes & Development. 23(4):466-481
- McDermott, B.M., Baucom, J.M., and Hudspeth, A.J. (2007) Analysis and functional evaluation of the hair-cell transcriptome. Proceedings of the National Academy of Sciences of the United States of America. 104(28):11820-11825
- Link, V., Shevchenko, A., and Heisenberg, C.P. (2006) Proteomics of early zebrafish embryos. BMC Developmental Biology. 6:1
- Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J., and Marra,M.A. (2002) Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Proceedings of the National Academy of Sciences of the United States of America. 99(26):16899-903
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