Gene

samm50

ID
ZDB-GENE-040426-806
Name
SAMM50 sorting and assembly machinery component
Symbol
samm50 Nomenclature History
Previous Names
  • zgc:55803
Type
protein_coding_gene
Location
Chr: 25 Mapping Details/Browsers
Description
Acts upstream of or within liver development. Predicted to be located in mitochondrial outer membrane. Human ortholog(s) of this gene implicated in metabolic dysfunction-associated steatotic liver disease. Orthologous to human SAMM50 (SAMM50 sorting and assembly machinery component).
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
1 figure from Thisse et al., 2004
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
Wild Type Expression Summary
Phenotype
All Phenotype Data
No data available
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
Allele Type Localization Consequence Mutagen Supplier
sa11533Allele with one point mutationUnknownSplice SiteENU
sa24653Allele with one point mutationUnknownPremature StopENU
1 - 2 of 2
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Sequence Targeting Reagents
Targeting Reagent Created Alleles Citations
MO1-samm50N/ALiu et al., 2013
MO2-samm50N/ALiu et al., 2013
1 - 2 of 2
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Human Disease
Associated With samm50 Human Ortholog
No data available
Associated With samm50 Via Experimental Models
No data available
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Domain IPR000184 Bacterial surface antigen (D15)
Domain IPR034746 POTRA domain
Family IPR039910 Surface antigen D15-like
1 - 3 of 3
Domain Details Per Protein
Protein Additional Resources Length Bacterial surface antigen (D15) POTRA domain Surface antigen D15-like
UniProtKB:Q803G5 InterPro 469
UniProtKB:B2GSP6 InterPro 469
1 - 2 of 2
Transcripts
Genome Browsers
Genome Build: GRCz11Chromosome: 25
Type Name Annotation Method Has Havana Data Length (nt) Analysis
mRNA samm50-201 (1) Ensembl 1,833 nt
1 - 1 of 1
Interactions and Pathways
No data available
Antibodies
No data available
Plasmids
No data available
Constructs
No data available
Marker Relationships
Relationship Marker Type Marker Accession Numbers Citations
Contained inBACDKEY-218L23ZFIN Curated Data
EncodescDNAMGC:55803ZFIN Curated Data
EncodescDNAMGC:192683ZFIN Curated Data
1 - 3 of 3
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Sequences
Orthology
Comparative Orthology
Alliance
Gene Tree
Ensembl
Species Symbol Chromosome Accession # Evidence
HumanSAMM5022
Conserved genome location (synteny) (1)
Amino acid sequence comparison (1)
MouseSamm5015
Amino acid sequence comparison (1)
Conserved genome location (synteny) (1)
Citations
1 - 6 of 6
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